NCBI CCDS banner
PubMed Entrez Gene BLAST OMIM
  

CCDS
Home
FTP
Process
Releases & Statistics

Collaborators
EBI
HGNC
MGI
NCBI

Contact Us
email CCDS

Genome Displays

Ensembl
NCBI
UCSC
VEGA

Related Resources
Gene
HomoloGene
MANE
RefSeq

Report for CCDS38005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38005.1 Public Mus musculus 19 Pprc1 23 108 98 CCDS HistoryNCBI Gene:226169Re-query CCDS DB by CCDS ID:38005.1Re-query CCDS DB by GeneID:226169See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38005.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000111899.7 ENSMUSP00000107530.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111899.7Link to Ensembl Protein Viewer:ENSMUSP00000107530.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111899Re-query CCDS DB by Protein ID:ENSMUSP00000107530
Original member Current member NCBI NM_001081214.1 NP_001074683.1 Accepted alive Link to Nucleotide Sequence:NM_001081214.1Link to Protein Sequence:NP_001074683.1Re-query CCDS DB by Nucleotide ID:NM_001081214Re-query CCDS DB by Protein ID:NP_001074683Link to BLAST:NP_001074683.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074683.1 1644 Q6NZN1-1 1644 100% 0 0

Chromosomal Locations for CCDS 38005.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 19 (NC_000085.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 46056591 46056743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46061403 46061576 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46062144 46062290 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46062402 46062503 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46062612 46065480 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46065664 46065717 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46067229 46067286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46068021 46068088 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46069039 46069768 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46071277 46071411 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46071519 46071585 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46071702 46071823 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46072183 46072334 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 46072549 46072652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4935 nt):
ATGGCGGCGCGCCGGGGACGGAGAGACCGAGTCGCGCCGCCTCCGACTGGGGGCCCGGGTCCTGACCCTG
GCGGTGGAGTGCGTGGCGGCAGTTGGGCGAGTCGAAGCCAAGCGCCGTATGGGACCGGGGGCTCCGTGAG
CGCCGCGGAGCAGGTCCATGAGGAAGGGAATGACTCTAGCTTTGTCAGTCTTTCTCGACTGGGCCCCTCT
CTGAGGGAGAAAGACCTGGAAATGGAGGAACTGATACTGCAGGATGAGACCCTCCTGGAGACCATGCAGA
GCTACATGGACGCCTCCCTTATATCCCTCATTGAGGATTTTGGAGAGAGCAGATTATCTCTGGAGGACCA
GAATGAAATGTCGCTGCTCACAGCTCTGACGGAGATCTTGGACAATGCAGATTCTGAGAACCTGTCCCCT
TTTGACACCATTCCTGATTCAGAGCTGCTCGTGTCCCCTCGGGAGAGCTCCTCTCTGCACAAGCTGCTCA
ATCTCTCTCGGACACCCCCAGAACGTGACCTTATCACCCCAATTGACCCTTTGGGGCCCAGCACAGGAAG
TAGTCGGGTGAGTGGGGTTGAGGTGCCTCTTGCAGACTCTCCATGGGACTTCTCTCCGCCTCCTTTCTTG
GAAACTTCTTCCCCTAAGCTGCCTAGCTGGAGACCCTCGAGACCAAGACCTCGATGGGGTCAGTCCCCTC
CTCCTCAGCAGCGCAGTGATGGGGAAGAGGAGGAGGAGGTCGCCGGTTTCAGTGGTCAGATGCTTGCTGG
CAAACTCGACAACTCTGTGAACAATGTCCTGGACTTCCCCATGCACCTGGCATGCCCTGAGGAAGAAGGC
ACAGCCGAGGGAGCAGATGCGCCAGCGTCAGCCCCTGGTGACGAGAGCATCTCCTCCTTGAGTGAGCTGG
TTCGGGCCATGCATCCCTACTGCTTGCCCAACCTCACCCACTTGGCATCCCTTGAGGGTGAACTTGAGGG
ACAGGCTGATGCTGACGCTGACGAGTTGACGCTGCCTGAGGGCTGTGTTGTACTGGAGATTGTTGGCCAG
GCAGCCACAACTGGTGATGACCTCGAGATCCCAGTCGTGGTGCGGCAGATTCCTTCTGGATCCCAGTCTG
TGCTCCTGGATGAGTCTCTAGGAAGCAGTCCTGCCTTGCAGTTACTCATGCCCACCATGGAGTCCGAGAC
CGAAGCTGCTGTGCCTGAAGTTGCTCCTTGCCCCGATGAAGAATTACCACTGAGCTCCGCCTGCTTATTG
GAGCCCAGGGAAATCATGGAGTCATTGACACCCAAGGAACCTCAGAGCCTACCTGCCAGTGCAAGTCAGG
GTTCTCAGAAAGTTCCCAGAAAGGGTAGGAAGAAGAAGAACAAGGAACAGCCAACAGCCTGTGTGGAAGC
CTGTACCAGGCGGCTGAGGTCATCTTCTCGAGGACAGTCTACTGTGTCTGCAGAGGTGAACTCTCAGGCA
GGCAGTTCACAGAAACAGCCCCAGGAAGAGCTTCAGAGAGAGGCTGCTGCCCTTCAGAGCAGAGGGAAGC
CACGGGCTTGGGCTCGGGCCTGGGCAGCTGCCTTAGAGAAGACAGGGTCCGAGAATTTAGAGAGAAGTGC
GGGACAGGATAGTCCTGCTGAAGAAGACGCACTGGATCTCTGTCCTAAGCTGCTTGAGACCAGCCAAGCC
AACCCCACTCTCTCATTAAATGACTCTGCTCAAGCTGACTCCATGCCTGTTGACTCTGTTGAAGGTGATT
CCCCTGCAGTTGGCAATGCTGCACCTGGTGATCAGGCTTCATCTGGTACAGAGCTGGTTGGTTCTCTCCC
AGTAGGCCCAAACCTGACTAGCCCAGTCCTGGCTGACAAGAAAGGAATTGAACCTGCAGTGGCTATTCCC
ACTTCGGATAACTTGTCTCCAGCTGATGTCCTAGCAAACACAGTGGCAGCTGACCCTGTTCCAAATGACC
CTGCTCCAGCAGATCCTGTGCTAGTTAAGTGCAGACCCACTGATCCTAGGCGTGCTGCAGCAGCAGCAGC
AGCAGCAGCTCAGGGGAGTCGTCCTTCCCTACAGTCCGCAGACCATCCTAAGGTCGTCAGCCCTGAAGGC
AAGGATGTTGTAGGTCCTCTGAAGGTGGAAGGTAGTACCAGCGCTACAACCCAGGAAGCCAAACCTCGGC
CTCTCAGCCTATCTGAGTACCGTCAGCGAAGGCAGCAACGGCAAACGGAAGCAGAAGACAGGAATTCTCA
GCCCCCAGTTGTTGGCAAGTGGCCTAGTCTCCCAGAGACCCCCACAGAACTGGCAGATATCCCTTGCCTT
GTTCCATCAGCCCCAGCCAGGAAGACAGCTCCACAGAGAAGCCCTATAGCTGTACCAGAGACTGTGTCTG
TGGGTTCTAATCCTGTTTCCCCTACTCCTGAGCCATCTGCAAGCAAACTTATGGTTTCAACTCACTCTGA
ACAGGTGTCATCTCATGAGATGCCACTTGCAGTTAGACCACCCCCTCCTCCTTTGCCGTCTGTGTCTCCT
GCTGGACCCATCCCGTCCACGGTGCCCGCTCCTTTGCCTCCTTTCCCTCCGAGTGTACCGCCTTTGCTTC
CTCTTCCTTCAGGTGGCCATGGAGTCCCCCGCCTGCCCCCACCTCCTTTGCAACCTCCTGGACTTCCAGT
ATCAATGAGACAAATGCCACCTGACCCCTATACTCAGTATGCCCCTGTGCCACCCTGGTCTTGTTACCCC
TCTGTGTCCCCTCCGGGCTATTCTTGTTTGCCCCCACCACCAACGATGCCCATAGTATCTGGTACTCCTG
GTACCTATGCTGTGCCCCCAACTTGCAATGTGCCTTGGGTACCCCCTCCTGCACCAGTTTCACCTTACAG
CTCCAGCTGTGCCTATGGATCCCTTGGGTGGGGCCCAGGGCTGCAACAGCCTCCCTTTTGGTCTACTGTT
TCTCCACCTCCGTTGTCTTCAGTCCCTACTGGAAGAGCTGTTCCCCCGACCCCCGTGGAACCCAGTGGTG
ATCCCGCTGGTCCTCCTGAAGATGTGCTTCCTGGGCCAGTGACTCCTTCCCTAAGCTCCGGGCCGGCCAG
CCCCGCAGCTCCACCAGTAGAACCTACAAAGCCGGAGGCTCAGCCAGTGCCTGTATCTCCCCAGCCGAAA
CACAAAGTGTCCACCTTGGTACAGAGTCCCCAGATCAAGGCTCCACCGACTTTGTCTACTGAGGGTGTAG
TTTTTGAGGAGTCTGTATCAGAGAGGCTAAAGTCTGAGACCCAGGAGAACAGACCAAAGGAGAAGCCCAT
CTCTACAGCTATCAAGTCTGTCCCTGTGCCAAAGCAGAGCGCTGTTGCAAAGCTACCTGCTGTCCATCCA
GCCCGTCTAAGGAAGCTGTCCTTCCTGCCCACCCCACGTGCTCAGGGTCCTGAGGATGTGGTGCAGGCGT
TCATCAGTGAGATTGGGATCGAAGCATCAGATCTGTCGAGTCTGTTGGAGCAGTTTGAGAAGTCAGAAGC
CAAAAAGGAGTGTCCTCTCCCGGCTTCTGCTGACAGCTTGGCTGTAGGAAACTCAGGCATTGACATTCCC
CAGGAGAAGAAGCCCTTAGACCGGTTACAAGCCCCAGAACTGGCCAACGTGGCAGGGCTCACCCCTCCAG
CTACCCCTCCCCACCAGTTATGGAAACCCCTGGCTGCTGTCTCACTCTTGGCGAAAGCCAAATCTCCTAA
ATCCACCGCCCAAGAGGGAACCCTGAAGCCTGAAGGAATTACAGAGGCCAAACCTCCAGCTACAGCCTGC
CTCCAAGAAGGGGCCCACAGCCCTAGTCCAGTCCATGTGGGCTCTGGGGACCATGACTATTGTGTCCGAA
GCAGGACACCCCCAAAAAGGATGCCTGCCCTAGTCATCTCAGAGGTGGGCTCCCGATGGAATGTCAAGCG
CCATCAGGACATCACCATCAAGCCTGTGTTGTCATTGGGCTCAGCTGCACCCCCACTCCCATGCACGGCT
ACTTCCCAGGAGCCTCTTGATCACAGGACTAGCGTTGAGCAGGCAGATCCTTCAGCGCCTTGTTTTGCCC
CATCCACCTTGCTGTCTCCTGAGGCTTCACCCTGCCGGAGTGAAATGAACGCTAGGACTCCCCCTGAGCC
CTCAGACAAGCAGCAGTCAATGCGCTGTTACCGAAAAGCCTGCAGATCAGTCAGCCCCTCAAGTAGGGGC
TGGCAAGGCCGCCGTGGCCGCAGTAGCCGTTCTGTCAGCTCTGGGTCCAGCCGGACCAGTGAAGCGTCCT
CGTCCTCATCGGTGTCTTCCTCATCCCGATCCCGGTCCCGGTCCAGGTCCAGGTCCTTCTCCCCCCCCAA
CAAGAGGTGGCGAAGGTCCAGCTGCAGTTCCTCTGGACGGTCCAGAAGGTGTTCATCCTCCTCCTCCTCC
TCCTCTTCCTCCTCATCGTGCAGTTCCAGAAGCCGGTCTCCCTCTGTGTCCCCTTGCAGGAGAAGTGACC
GGAGGCGGCGGTACAGCTCTTACCGTGCAAATGACCATTACCAAAGGCAGAGAGTGCTACAGAAGGAGCG
TGCAATAGAAGAGAGAAGGGTGGTCTTCATTGGGAAAATACCTGGCCGAATGACTCGGTCGGAGCTGAAA
CAGAGGTTCTCTGTTTTTGGAGAAATTGAGGAGTGTACCATTCATTTTCGTGTCCAAGGTGACAACTATG
GTTTCGTCACTTACCGTTATGCTGAAGAGGCATTTGCAGCCATTGAGAGTGGCCACAAGTTGCGGCAGGC
AGACGAGCAGCCCTTTGATCTCTGCTTTGGGGGCCGAAGGCAGTTCTGCAAGAGGAGTTACTCTGACCTT
GACTCCAATCGGGAAGACTTTGATCCTGCTCCTGTAAAGAGCAAATTCGATTCACTTGACTTTGATACAT
TGTTGAAACAGGCCCAGAAGAACCTCAGGAGGTAA

Translation (1644 aa):
MAARRGRRDRVAPPPTGGPGPDPGGGVRGGSWASRSQAPYGTGGSVSAAEQVHEEGNDSSFVSLSRLGPS
LREKDLEMEELILQDETLLETMQSYMDASLISLIEDFGESRLSLEDQNEMSLLTALTEILDNADSENLSP
FDTIPDSELLVSPRESSSLHKLLNLSRTPPERDLITPIDPLGPSTGSSRVSGVEVPLADSPWDFSPPPFL
ETSSPKLPSWRPSRPRPRWGQSPPPQQRSDGEEEEEVAGFSGQMLAGKLDNSVNNVLDFPMHLACPEEEG
TAEGADAPASAPGDESISSLSELVRAMHPYCLPNLTHLASLEGELEGQADADADELTLPEGCVVLEIVGQ
AATTGDDLEIPVVVRQIPSGSQSVLLDESLGSSPALQLLMPTMESETEAAVPEVAPCPDEELPLSSACLL
EPREIMESLTPKEPQSLPASASQGSQKVPRKGRKKKNKEQPTACVEACTRRLRSSSRGQSTVSAEVNSQA
GSSQKQPQEELQREAAALQSRGKPRAWARAWAAALEKTGSENLERSAGQDSPAEEDALDLCPKLLETSQA
NPTLSLNDSAQADSMPVDSVEGDSPAVGNAAPGDQASSGTELVGSLPVGPNLTSPVLADKKGIEPAVAIP
TSDNLSPADVLANTVAADPVPNDPAPADPVLVKCRPTDPRRAAAAAAAAAQGSRPSLQSADHPKVVSPEG
KDVVGPLKVEGSTSATTQEAKPRPLSLSEYRQRRQQRQTEAEDRNSQPPVVGKWPSLPETPTELADIPCL
VPSAPARKTAPQRSPIAVPETVSVGSNPVSPTPEPSASKLMVSTHSEQVSSHEMPLAVRPPPPPLPSVSP
AGPIPSTVPAPLPPFPPSVPPLLPLPSGGHGVPRLPPPPLQPPGLPVSMRQMPPDPYTQYAPVPPWSCYP
SVSPPGYSCLPPPPTMPIVSGTPGTYAVPPTCNVPWVPPPAPVSPYSSSCAYGSLGWGPGLQQPPFWSTV
SPPPLSSVPTGRAVPPTPVEPSGDPAGPPEDVLPGPVTPSLSSGPASPAAPPVEPTKPEAQPVPVSPQPK
HKVSTLVQSPQIKAPPTLSTEGVVFEESVSERLKSETQENRPKEKPISTAIKSVPVPKQSAVAKLPAVHP
ARLRKLSFLPTPRAQGPEDVVQAFISEIGIEASDLSSLLEQFEKSEAKKECPLPASADSLAVGNSGIDIP
QEKKPLDRLQAPELANVAGLTPPATPPHQLWKPLAAVSLLAKAKSPKSTAQEGTLKPEGITEAKPPATAC
LQEGAHSPSPVHVGSGDHDYCVRSRTPPKRMPALVISEVGSRWNVKRHQDITIKPVLSLGSAAPPLPCTA
TSQEPLDHRTSVEQADPSAPCFAPSTLLSPEASPCRSEMNARTPPEPSDKQQSMRCYRKACRSVSPSSRG
WQGRRGRSSRSVSSGSSRTSEASSSSSVSSSSRSRSRSRSRSFSPPNKRWRRSSCSSSGRSRRCSSSSSS
SSSSSSCSSRSRSPSVSPCRRSDRRRRYSSYRANDHYQRQRVLQKERAIEERRVVFIGKIPGRMTRSELK
QRFSVFGEIEECTIHFRVQGDNYGFVTYRYAEEAFAAIESGHKLRQADEQPFDLCFGGRRQFCKRSYSDL
DSNREDFDPAPVKSKFDSLDFDTLLKQAQKNLRR


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

Disclaimer | Write to the Help Desk
NCBI | NLM | NIH