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Report for CCDS13097.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
13097.1 Public Homo sapiens 20 LRRN4 24 110 108 CCDS HistoryNCBI Gene:164312Re-query CCDS DB by CCDS ID:13097.1See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 13097.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000378858.5 ENSP00000368135.4 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000378858.5Link to Ensembl Protein Viewer:ENSP00000368135.4Re-query CCDS DB by Nucleotide ID:ENST00000378858Re-query CCDS DB by Protein ID:ENSP00000368135
Original member Current member NCBI NM_152611.5 NP_689824.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_152611.5Link to Protein Sequence:NP_689824.2Re-query CCDS DB by Nucleotide ID:NM_152611Re-query CCDS DB by Protein ID:NP_689824Link to BLAST:NP_689824.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_689824.2 740 Q8WUT4 740 100% 0 0

Chromosomal Locations for CCDS 13097.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 6041022 6042246 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6044543 6044680 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6050779 6050983 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 6052145 6052799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2223 nt):
ATGCGGCAAACCCTACCGCTGCTGCTGCTGACGGTGCTGCGCCCCAGCTGGGCAGACCCTCCCCAGGAGA
AGGTCCCGCTCTTCCGGGTCACTCAGCAGGGCCCCTGGGGGAGCAGTGGCAGCAACGCCACCGACTCGCC
CTGCGAGGGGCTGCCCGCCGCGGATGCGACGGCCTTGACCCTGGCGAACCGCAACCTGGAGCGCCTGCCC
GGCTGCCTACCGCGCACACTGCGCAGCCTCGACGCCAGCCACAACCTGCTGCGCGCCCTGAGCACTTCCG
AGCTCGGCCACCTGGAGCAGCTGCAGGTGCTGACCCTGCGCCACAACCGCATCGCCGCGCTGCGCTGGGG
CCCGGGTGGGCCGGCGGGGCTGCACACCCTGGACCTCAGCTACAACCAGCTGGCCGCTCTGCCGCCGTGC
ACCGGGCCCGCGCTGAGCAGCCTCCGCGCCCTGGCGCTCGCCGGGAATCCGCTGCGGGCGCTGCAGCCCC
GGGCCTTCGCCTGCTTCCCCGCGCTGCAGCTCCTCAACCTCTCCTGCACCGCGCTGGGTCGCGGAGCCCA
GGGGGGCATCGCCGAGGCGGCGTTCGCTGGAGAGGATGGCGCGCCCCTGGTCACGCTCGAAGTCCTGGAT
CTCAGCGGCACGTTCCTTGAACGGGTTGAGTCAGGGTGGATCAGAGACCTGCCGAAGCTCACATCCCTCT
ACCTGAGGAAGATGCCTCGGCTGACGACCCTGGAGGGGGACATTTTCAAGATGACCCCCAACCTGCAGCA
GCTGGACTGTCAGGACTCCCCAGCACTTGCTTCTGTCGCCACACACATCTTTCAAGATACTCCACATCTA
CAGGTCCTTCTGTTCCAGAACTGCAACTTGAGTTCCTTCCCTCCTTGGACCCTGGATTCCTCCCAGGTCC
TATCGATCAACCTCTTTGGCAACCCCCTCACTTGCAGTTGTGACTTGTCTTGGCTCCTCACGGATGCAAA
GAGAACTGTCCTAAGCAGGGCAGCAGACACTATGTGCGCGCCAGCTGCGGGATCCAGCGGCCCCTTCTCA
GCCTCCCTGTCACTCTCCCAGCTGCCCGGAGTGTGCCAGTCCGACCAAAGCACCACTCTCGGGGCTTCAC
ACCCACCTTGCTTCAACCGCTCCACCTACGCACAGGGTACCACCGTCGCGCCCAGCGCAGCCCCCGCCAC
CCGGCCTGCGGGAGACCAGCAGAGTGTCTCCAAGGCCCCTAACGTGGGCTCTCGCACGATAGCTGCATGG
CCGCACAGCGATGCACGGGAGGGGACTGCCCCCTCCACGACCAACTCTGTAGCAGGTCACAGCAACTCCA
GCGTTTTCCCCAGGGCTGCCAGCACCACCAGGACCCAGCACCGAGGAGAACATGCCCCCGAGCTTGTCCT
TGAGCCTGATATCTCAGCTGCCTCCACCCCACTGGCCAGCAAGCTCCTGGGCCCCTTCCCTACCTCGTGG
GACCGCAGCATAAGCTCGCCTCAGCCCGGCCAGAGGACACACGCCACACCCCAAGCCCCCAACCCGAGTC
TTTCCGAGGGCGAGATTCCAGTCTTGCTGCTGGACGACTACAGTGAGGAGGAGGAAGGGAGGAAGGAGGA
GGTGGGAACGCCTCACCAGGACGTCCCCTGTGATTACCATCCCTGCAAGCACCTGCAGACCCCGTGCGCG
GAGCTGCAGAGGCGGTGGCGGTGCCGGTGCCCCGGCCTCAGCGGGGAAGACACCATCCCAGACCCGCCCA
GGCTGCAGGGGGTGACGGAGACCACGGACACGTCGGCGCTGGTCCACTGGTGTGCCCCCAACTCGGTAGT
GCATGGGTACCAGATCCGCTACTCTGCGGAGGGCTGGGCGGGGAACCAGTCGGTGGTGGGGGTCATCTAC
GCCACGGCCCGGCAGCACCCTCTGTACGGGCTGTCGCCGGGCACCACCTACCGCGTGTGCGTGCTGGCGG
CCAACAGGGCGGGCTTGAGCCAGCCACGGTCTTCGGGCTGGAGGAGCCCGTGCGCCGCCTTCACCACCAA
GCCCAGCTTCGCGCTCCTGCTCTCTGGGCTGTGCGCCGCCAGCGGCCTGTTGCTCGCCAGCACCGTGGTG
CTGTCCGCATGTCTCTGCAGGCGGGGCCAGACGCTGGGCCTGCAGCGCTGCGACACGCACCTGGTGGCCT
ACAAAAACCCGGCCTTTGATGATTACCCGCTGGGGCTCCAGACCGTCAGTTAG

Translation (740 aa):
MRQTLPLLLLTVLRPSWADPPQEKVPLFRVTQQGPWGSSGSNATDSPCEGLPAADATALTLANRNLERLP
GCLPRTLRSLDASHNLLRALSTSELGHLEQLQVLTLRHNRIAALRWGPGGPAGLHTLDLSYNQLAALPPC
TGPALSSLRALALAGNPLRALQPRAFACFPALQLLNLSCTALGRGAQGGIAEAAFAGEDGAPLVTLEVLD
LSGTFLERVESGWIRDLPKLTSLYLRKMPRLTTLEGDIFKMTPNLQQLDCQDSPALASVATHIFQDTPHL
QVLLFQNCNLSSFPPWTLDSSQVLSINLFGNPLTCSCDLSWLLTDAKRTVLSRAADTMCAPAAGSSGPFS
ASLSLSQLPGVCQSDQSTTLGASHPPCFNRSTYAQGTTVAPSAAPATRPAGDQQSVSKAPNVGSRTIAAW
PHSDAREGTAPSTTNSVAGHSNSSVFPRAASTTRTQHRGEHAPELVLEPDISAASTPLASKLLGPFPTSW
DRSISSPQPGQRTHATPQAPNPSLSEGEIPVLLLDDYSEEEEGRKEEVGTPHQDVPCDYHPCKHLQTPCA
ELQRRWRCRCPGLSGEDTIPDPPRLQGVTETTDTSALVHWCAPNSVVHGYQIRYSAEGWAGNQSVVGVIY
ATARQHPLYGLSPGTTYRVCVLAANRAGLSQPRSSGWRSPCAAFTTKPSFALLLSGLCAASGLLLASTVV
LSACLCRRGQTLGLQRCDTHLVAYKNPAFDDYPLGLQTVS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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