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Report for CCDS39729.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
39729.1 Public Mus musculus 7 Prpf31 23 108 98 CCDS HistoryNCBI Gene:68988Re-query CCDS DB by CCDS ID:39729.1Re-query CCDS DB by GeneID:68988See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 39729.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000008517.12 ENSMUSP00000008517.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000008517.12Link to Ensembl Protein Viewer:ENSMUSP00000008517.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000008517Re-query CCDS DB by Protein ID:ENSMUSP00000008517
Original member Current member NCBI NM_027328.4 NP_081604.3 Accepted alive Link to Nucleotide Sequence:NM_027328.4Link to Protein Sequence:NP_081604.3Re-query CCDS DB by Nucleotide ID:NM_027328Re-query CCDS DB by Protein ID:NP_081604Link to BLAST:NP_081604.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081604.3 499 Q8CCF0-1 499 100% 0 0

Chromosomal Locations for CCDS 39729.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 3630566 3630742 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3630845 3630905 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3632668 3632751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3633304 3633401 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3634124 3634230 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3634693 3634862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3636201 3636358 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3636662 3636751 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3638631 3638758 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3638858 3638930 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3639576 3639704 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3639789 3639887 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 3640797 3640922 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1500 nt):
ATGTCTCTGGCTGATGAGCTCTTGGCTGACCTCGAGGAGGCAGCAGAAGAAGAGGAAGGAGGAAGCTATG
GAGAAGAGGAGGAGGAGCCAGCAATTGAGGATGTACAGGAGGAGACCCAGCTGGATCTTTCTGGAGATTC
AGTCAAGAGCATTGCCAAGCTATGGGACAGCAAGATGTTTGCTGAGATCATGATGAAGATTGAGGAGTAT
ATCAGCAAGCAAGCCAACGTGTCGGAAGTGATGGGACCAGTGGAGGCAGCTCCTGAGTACCGAGTCATTG
TGGATGCCAACAACCTGACTGTGGAGATAGAAAATGAGCTGAACATTATCCACAAGTTCATCCGGGATAA
ATACTCAAAGAGATTCCCTGAGCTAGAATCCTTGGTGCCCAATGCTCTGGATTACATCCGCACAGTCAAG
GAGCTGGGCAACAGCCTGGATAAGTGCAAGAACAATGAGAACCTCCAGCAGATCCTGACCAATGCTACTA
TCATGGTTGTTAGTGTCACTGCCTCTACTACCCAGGGGCAGCAGCTGTCGGATGAGGAGCTAGAGCGGCT
AGAGGAGGCCTGTGACATGGCACTGGAGCTGAATGCCTCCAAACACCGCATCTATGAGTATGTGGAGTCC
CGGATGTCCTTCATTGCACCCAACTTGTCCATCATCATTGGAGCATCCACAGCTGCCAAGATCATGGGTG
TGGCTGGAGGGCTCACCAACCTCTCTAAGATGCCTGCCTGCAACATCATGCTGCTGGGAGCCCAGCGCAA
GACCCTGTCTGGCTTCTCTTCTACCTCAGTGTTGCCTCATACTGGTTATATCTACCACAGTGACATTGTG
CAGTCTCTGCCCCCAGATCTCCGGCGGAAGGCGGCCCGCCTAGTGGCTGCCAAGTGTACACTGGCAGCTC
GTGTGGACAGCTTCCATGAGAGCACAGAAGGGAAGGTGGGCTACGAACTAAAGGATGAGATTGAGCGCAA
ATTTGATAAGTGGCAGGAGCCACCACCCGTGAAGCAGGTGAAGCCCCTGCCTGCACCCCTTGATGGGCAG
CGGAAGAAGCGAGGGGGCCGAAGGTACCGCAAGATGAAGGAACGGCTAGGACTGACGGAGATCCGGAAGC
AGGCCAACCGCATGAGCTTTGGAGAGATTGAGGAGGATGCCTATCAGGAAGACCTGGGCTTTAGCCTGGG
CCACTTGGGCAAGTCAGGCAGTGGGCGTGTGCGGCAGACCCAGGTGAATGAGGCCACCAAGGCCAGGATC
TCCAAGACACTGCAGCGGACCTTACAGAAACAGAGCGTGGTGTATGGTGGGAAGTCAACAATTCGTGACC
GCTCCTCAGGGACTGCCTCCAGTGTGGCCTTCACTCCACTCCAGGGTCTAGAGATTGTGAACCCACAAGC
AGCCGAGAAGAAGGTGGCAGAGGCCAACCAGAAGTATTTCTCTAGCATGGCCGAGTTCCTCAAGGTCAAG
GGTGAGAAAAGTGGCACCATGTCTACCTGA

Translation (499 aa):
MSLADELLADLEEAAEEEEGGSYGEEEEEPAIEDVQEETQLDLSGDSVKSIAKLWDSKMFAEIMMKIEEY
ISKQANVSEVMGPVEAAPEYRVIVDANNLTVEIENELNIIHKFIRDKYSKRFPELESLVPNALDYIRTVK
ELGNSLDKCKNNENLQQILTNATIMVVSVTASTTQGQQLSDEELERLEEACDMALELNASKHRIYEYVES
RMSFIAPNLSIIIGASTAAKIMGVAGGLTNLSKMPACNIMLLGAQRKTLSGFSSTSVLPHTGYIYHSDIV
QSLPPDLRRKAARLVAAKCTLAARVDSFHESTEGKVGYELKDEIERKFDKWQEPPPVKQVKPLPAPLDGQ
RKKRGGRRYRKMKERLGLTEIRKQANRMSFGEIEEDAYQEDLGFSLGHLGKSGSGRVRQTQVNEATKARI
SKTLQRTLQKQSVVYGGKSTIRDRSSGTASSVAFTPLQGLEIVNPQAAEKKVAEANQKYFSSMAEFLKVK
GEKSGTMST


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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