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Report for CCDS12390.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
12390.1 Public Homo sapiens 19 DDX49 24 110 108 CCDS HistoryNCBI Gene:54555Re-query CCDS DB by CCDS ID:12390.1Re-query CCDS DB by GeneID:54555See the combined annotation on chromosome 19 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 12390.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000247003.9 ENSP00000247003.3 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000247003.9Link to Ensembl Protein Viewer:ENSP00000247003.3Re-query CCDS DB by Nucleotide ID:ENST00000247003Re-query CCDS DB by Protein ID:ENSP00000247003
Original member Current member NCBI NM_019070.5 NP_061943.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_019070.5Link to Protein Sequence:NP_061943.2Re-query CCDS DB by Nucleotide ID:NM_019070Re-query CCDS DB by Protein ID:NP_061943Link to BLAST:NP_061943.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_061943.2 483 Q9Y6V7-1 483 100% 0 0

Chromosomal Locations for CCDS 12390.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 19 (NC_000019.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19See the combined annotation on chromosome 19 in Sequence Viewer

Chromosome Start Stop Links
19 18919742 18919856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18920580 18920703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18921663 18921748 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18921843 18921964 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18922326 18922513 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18922604 18922744 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18924233 18924308 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18924623 18924699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18924882 18924979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18926303 18926377 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18927766 18927854 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18927965 18928036 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19
19 18928128 18928316 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 19Link to Ensembl Genome Browser on chromosome 19

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1452 nt):
ATGGCAGGCTTCGCGGAGCTCGGGCTGTCATCGTGGCTCGTGGAACAATGTCGGCAGCTGGGTTTGAAGC
AGCCCACGCCCGTGCAGCTCGGCTGCATCCCCGCCATCCTGGAGGGTCGAGACTGCTTGGGCTGTGCTAA
GACAGGCAGTGGGAAGACAGCAGCGTTTGTCCTTCCCATCTTGCAGAAGCTGTCTGAGGATCCCTATGGC
ATCTTCTGCCTCGTCCTGACACCCACCAGGGAGCTGGCCTACCAGATCGCAGAGCAGTTCCGGGTCCTGG
GGAAGCCTCTAGGGCTGAAAGACTGCATCATCGTCGGTGGCATGGACATGGTGGCCCAGGCGCTGGAGCT
CTCTCGGAAACCACACGTGGTCATCGCCACGCCGGGGCGCCTGGCAGATCACCTGCGCAGCTCCAACACT
TTTAGTATAAAGAAGATCCGCTTCCTGGTGATGGATGAGGCAGACCGGCTGCTGGAACAGGGCTGCACTG
ACTTCACCGTGGACCTGGAGGCCATCCTGGCGGCTGTGCCGGCCCGCAGGCAGACACTGCTGTTCAGCGC
CACGCTGACCGACACACTCCGGGAGCTGCAGGGTCTGGCCACCAACCAGCCCTTCTTCTGGGAAGCACAG
GCCCCGGTGAGCACCGTGGAGCAGCTGGACCAGCGCTACCTGCTGGTGCCTGAGAAGGTCAAGGACGCCT
ACCTGGTCCACCTGATCCAGCGCTTCCAGGATGAGCACGAGGACTGGTCCATTATCATCTTCACCAACAC
GTGCAAGACCTGCCAGATTCTGTGCATGATGCTGCGCAAATTCAGCTTCCCCACCGTGGCTCTGCACTCC
ATGATGAAGCAGAAAGAACGCTTTGCCGCCCTAGCCAAGTTCAAGTCCAGCATCTACCGGATCCTGATCG
CAACAGACGTGGCCTCCCGGGGCCTGGACATCCCTACGGTACAGGTGGTCATCAACCACAACACCCCCGG
GCTCCCCAAGATCTACATCCACCGAGTCGGCCGGACGGCCCGTGCAGGGCGGCAGGGTCAGGCCATCACG
CTGGTGACACAGTACGACATCCACCTGGTGCACGCCATCGAGGAGCAGATCAAGAAGAAGCTGGAGGAGT
TCTCCGTGGAAGAGGCCGAGGTGCTACAGATCCTCACACAGGTCAACGTGGTGCGAAGAGAGTGTGAGAT
CAAACTGGAGGCGGCCCACTTTGACGAAAAGAAGGAGATCAACAAACGGAAGCAGCTGATCCTGGAGGGG
AAGGACCCTGACCTGGAGGCCAAGCGCAAGGCTGAGCTGGCCAAGATCAAGCAGAAGAACCGGCGCTTCA
AGGAGAAGGTGGAGGAGACGCTGAAGCGACAGAAGGCTGGCAGGGCTGGCCACAAGGGGCGTCCACCCAG
GACACCGTCTGGGTCCCACTCAGGCCCAGTCCCCTCCCAGGGCCTGGTCTGA

Translation (483 aa):
MAGFAELGLSSWLVEQCRQLGLKQPTPVQLGCIPAILEGRDCLGCAKTGSGKTAAFVLPILQKLSEDPYG
IFCLVLTPTRELAYQIAEQFRVLGKPLGLKDCIIVGGMDMVAQALELSRKPHVVIATPGRLADHLRSSNT
FSIKKIRFLVMDEADRLLEQGCTDFTVDLEAILAAVPARRQTLLFSATLTDTLRELQGLATNQPFFWEAQ
APVSTVEQLDQRYLLVPEKVKDAYLVHLIQRFQDEHEDWSIIIFTNTCKTCQILCMMLRKFSFPTVALHS
MMKQKERFAALAKFKSSIYRILIATDVASRGLDIPTVQVVINHNTPGLPKIYIHRVGRTARAGRQGQAIT
LVTQYDIHLVHAIEEQIKKKLEEFSVEEAEVLQILTQVNVVRRECEIKLEAAHFDEKKEINKRKQLILEG
KDPDLEAKRKAELAKIKQKNRRFKEKVEETLKRQKAGRAGHKGRPPRTPSGSHSGPVPSQGLV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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