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Report for CCDS16669.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16669.1 Public Mus musculus 2 Sqor 23 108 98 CCDS HistoryNCBI Gene:59010Re-query CCDS DB by CCDS ID:16669.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16669.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000005953.10 ENSMUSP00000005953.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000005953.10Link to Ensembl Protein Viewer:ENSMUSP00000005953.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000005953Re-query CCDS DB by Protein ID:ENSMUSP00000005953
Original member Current member EBI ENSMUST00000110506.8 ENSMUSP00000106133.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110506.8Link to Ensembl Protein Viewer:ENSMUSP00000106133.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000110506Re-query CCDS DB by Protein ID:ENSMUSP00000106133
Original member Current member NCBI NM_001162503.1 NP_001155975.1 Accepted alive Link to Nucleotide Sequence:NM_001162503.1Link to Protein Sequence:NP_001155975.1Re-query CCDS DB by Nucleotide ID:NM_001162503Re-query CCDS DB by Protein ID:NP_001155975Link to BLAST:NP_001155975.1
Original member Current member NCBI NM_021507.5 NP_067482.4 Accepted alive Link to Nucleotide Sequence:NM_021507.5Link to Protein Sequence:NP_067482.4Re-query CCDS DB by Nucleotide ID:NM_021507Re-query CCDS DB by Protein ID:NP_067482Link to BLAST:NP_067482.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001155975.1 450 Q9R112 450 100% 0 0
NP_067482.4 450 Q9R112 450 100% 0 0

Chromosomal Locations for CCDS 16669.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 122784961 122785194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122787458 122787628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122792350 122792403 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122798038 122798232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122799762 122799971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122803922 122804105 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122807573 122807640 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122807954 122808132 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 122809281 122809338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1353 nt):
ATGGCCCCACTGGTCACTGTTGTCTCCAGTCCACGTGCCCGGCTCTTTGCCTGTTTTCTTAGGCTGGGCA
CTCAGCAGGCCGGACCCCTCCAATTGCATACAGGAGCCTGCTGCACAGCCAAGAACCACTATGAGGTGCT
GGTACTTGGTGGGGGAGCTGGAGGGATCACCATGGCCACTCGAATGAAGAGGAGAGTTGGAGCAGAGAAT
GTGGCCATTGTTGAACCCAGTGAGAGGCACTTCTACCAGCCAATCTGGACACTAGTGGGCGCGGGTGCCA
AAGAGTTGTCCTTGTCAGTCCGTTCCACACTGAGTGTGATTCCATCCGGAGTGCAGTGGATTCAAGATAG
AGTGGCGGAACTTAACCCAGACGAGAACTGTATCCGCACAGACAGTGGCAAGGAGATCTCCTACAGATAC
CTTATCATCGCTCTTGGAATCCAGCTGGACTATGAGAAGATTAAAGGACTACCTGAAGGCTTTGCTTATC
CCAAAATAGGGTCCAATTACTCAGTGAAGACAGTGGAGAAGACATGGAAGGCCCTGCAGGGTTTCAAGGA
AGGCAATGCCCTTTTCACCTTCCCAAACACTCCGGTGAAGTGTGCTGGTGCCCCCCAGAAGATCATGTAC
CTATCAGAAGCCTACTTCAGGAAGACTGGAAAGCGACCCAAGGCAAACATCATCTTCAACACAGCTTTAG
GAACAATTTTTGGAGTTAAGAAGTATGCAGATGCCTTGCAGGAGATCATTCGGGAGAGGGACGTCTCTGT
CAACTATAAGCACAACCTTATTGAGGTCCGACCTGACAAGCAGGAGGCCGTTTTTGAGATCCTGGACAAG
CCTGGGGAGACGCATGTGATTCCTTATGAAATGCTTCATGTCACACCACCTATGAGTGCACCAGATGTCC
TCAAGAGGAGTCCTGTGGCTGATTCTGCTGGCTGGGTGGACGTGGACAAAGAGACTCTGCAGCATAAGAA
ATACCCGAATGTGTTTGGCATTGGGGACTGCACCAATCTTCCAACTTCAAAGACTGCTGCTGCAGTAGCT
GCCCAGTCTGGAATCCTTGATAGAACAATGTGTCTGATTATGAAGAACCAAAGACCCATAAAAAAGTATG
ATGGTTATACCTCGTGCCCACTGGTAACTGGCTACAACCGAGTGATTCTTGCTGAGTTTGACTACACAGC
TCAGCCCCTGGAAACCTTCCCTTTTGATCAGAGTAAAGAGCGAATTACTATGTACCTAATGAAGGCTGAC
ATGATGCCATTCCTGTACTGGAATATGATGCTCAGAGGCTACTGGGGAGGTCCAGCCTTCTTGCGAAAGC
TGTTTCATCTGGGCATGAATTAA

Translation (450 aa):
MAPLVTVVSSPRARLFACFLRLGTQQAGPLQLHTGACCTAKNHYEVLVLGGGAGGITMATRMKRRVGAEN
VAIVEPSERHFYQPIWTLVGAGAKELSLSVRSTLSVIPSGVQWIQDRVAELNPDENCIRTDSGKEISYRY
LIIALGIQLDYEKIKGLPEGFAYPKIGSNYSVKTVEKTWKALQGFKEGNALFTFPNTPVKCAGAPQKIMY
LSEAYFRKTGKRPKANIIFNTALGTIFGVKKYADALQEIIRERDVSVNYKHNLIEVRPDKQEAVFEILDK
PGETHVIPYEMLHVTPPMSAPDVLKRSPVADSAGWVDVDKETLQHKKYPNVFGIGDCTNLPTSKTAAAVA
AQSGILDRTMCLIMKNQRPIKKYDGYTSCPLVTGYNRVILAEFDYTAQPLETFPFDQSKERITMYLMKAD
MMPFLYWNMMLRGYWGGPAFLRKLFHLGMN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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