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Report for CCDS17008.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
17008.1 Public Mus musculus 2 Jph2 23 108 98 CCDS HistoryNCBI Gene:59091Re-query CCDS DB by CCDS ID:17008.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 17008.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000017961.10 ENSMUSP00000017961.4 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000017961.10Link to Ensembl Protein Viewer:ENSMUSP00000017961.4Re-query CCDS DB by Nucleotide ID:ENSMUST00000017961Re-query CCDS DB by Protein ID:ENSMUSP00000017961
Original member Current member EBI ENSMUST00000109425.2 ENSMUSP00000105052.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109425.2Link to Ensembl Protein Viewer:ENSMUSP00000105052.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000109425Re-query CCDS DB by Protein ID:ENSMUSP00000105052
Original member Current member NCBI NM_001205076.1 NP_001192005.1 Accepted alive Link to Nucleotide Sequence:NM_001205076.1Link to Protein Sequence:NP_001192005.1Re-query CCDS DB by Nucleotide ID:NM_001205076Re-query CCDS DB by Protein ID:NP_001192005Link to BLAST:NP_001192005.1
Original member Current member NCBI NM_021566.2 NP_067541.1 Accepted alive Link to Nucleotide Sequence:NM_021566.2Link to Protein Sequence:NP_067541.1Re-query CCDS DB by Nucleotide ID:NM_021566Re-query CCDS DB by Protein ID:NP_067541Link to BLAST:NP_067541.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001192005.1 696 Q9ET78 696 100% 0 0
NP_067541.1 696 Q9ET78 696 100% 0 0

Chromosomal Locations for CCDS 17008.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 163338619 163338699 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163339233 163339972 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163341462 163341580 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163375604 163376375 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 163397148 163397526 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2091 nt):
ATGAGCGGGGGCCGCTTTGACTTTGATGATGGCGGGGCGTATTGTGGGGGCTGGGAAGGGGGAAAGGCAC
AC
GGGCACGGACTGTGCACCGGCCCCAAGGGCCAGGGTGAATACTCGGGCTCCTGGAATTTTGGCTTTGA
A
GTGGCAGGCGTCTATACCTGGCCCAGTGGGAATACCTTTGAGGGATATTGGAGCCAGGGCAAACGACAT
GGG
CTTGGCATAGAGACCAAGGGGCGCTGGCTCTACAAGGGGGAGTGGACGCATGGCTTTAAGGGGCGCT
AC
GGAATCCGGCAGAGCACAAACAGTGGTGCCAAGTACGAGGGCACTTGGAATAACGGCCTACAGGACGG
C
TATGGCACGGAGACCTACGCAGACGGAGGAACCTATCAAGGCCAATTCACCAACGGCATGCGCCATGGC
TAC
GGTGTGCGCCAAAGCGTGCCCTACGGGATGGCAGTGGTGGTGCGTTCTCCGCTGCGCACTTCTCTGT
CC
TCGCTGCGCAGCGAGCACAGCAATGGAACGGTGGCTCCGGACTCACCGGCGGCAGATGGGCCCATGCT
G
CCTTCGCCCCCAGTGCCGCGCGGTGGTTTCGCGCTCACTCTGCTGGCCACAGCAGAGGCCGCGCGACCC
CAA
GGGCTGTTCACGCGTGGCACACTGCTGGGTCGGCTGCGACGCTCAGAATCACGCACATCACTGGGCA
GC
CAGCGGAGCCGCTTGAGCTTTCTCAAGAGCGAGCTGAGTTCCGGAGCCAGCGATGCCGCATCCACTGG
C
AGCCTGGCCGAGGGCGCTGAGGGCCCCGACGACGCGGCTGCGCCCTTCGATGCCGACATCGACGCCACC
ACC
ACGGAAACCTACATGGGCGAGTGGAAGAACGACAAGCGCTCGGGCTTCGGCGTGAGCGAGCGTTCCA
GC
GGCCTGCGCTACGAGGGCGAGTGGCTGGACAACCTGCGCCACGGCTACGGCCGCACCACGCTGCCCGA
C
GGCCACCGCGAGGAGGGCAAGTACCGCCACAATGTGCTGGTCAAGGGCACCAAGCGCCGCGTGCTGCCG
CTC
AAGAGCAGCAAGGTCCGCCAGAAGGTGGAGCACGGGGTGGAGGGCGCCCAGCGCGCAGCAGCCATCG
CG
CGCCAGAAGGCCGAGATTGCCGCCTCCAGGACAAGCCATGCCAAAGCCAAGGCAGAGGCAGCAGAACA
G
GCTGCCCTGGCTGCCAACCAGGAGTCCAACATCGCCCGTACATTGGCCAAGGAGCTGGCTCCAGACTTC
TAC
CAGCCAGGTCCGGAGTATCAGAAGCGTCGGCTGCTCCAGGAGATCCTGGAGAACTCTGAGAGCTTGC
TG
GAGCCCCCAGAGCGGGGTCTGGGCACCGGCCTCCCGGAGCGGCCCCGGGAAAGCCCGCAGCTGCATGA
G
CGCGAGACCCCGCAGCCCGAGGGCGGACCCCCGTCTCCGGCCGGGACGCCCCCGCAACCCAAGAGGCCC
CGG
CCCGGAGCGTCAAAGGACGGCCTGCTGAGTCCAGGCTCCTGGAACGGGGAGCCCGGCGGAGAGGGCA
GC
CGGCCCGCCACGCCGTCGGATGGCGCCGGTCGTCGCAGCCCCGCGCGCCCCGCCTCGGAGCACATGGC
C
ATCGAGGCGCTGCAGCCGCCGCCCGCGCCCTCGCAGGAGCCCGAGGTAGCAATGTACCGCGGCTACCAT
AGC
TACGCCGTGCGCACCGGGCCACCCGAGCCTCCGCCCTTGGAGGATGAGCAGGAGCCCGAGCCGGAGC
CC
GAGCCCGAGGTCCGGCGATCCGACTCGGCGCCCCCGTCCCCCGTCTCCGCCACCGTCCCGGAGGAGGA
G
CCCCCTGCGCCGCGAAGCCCGGTGCCTGCCAAGCAAGCCACTCTGGAGCCCAAGCCCATCGTCCCCAAA
GCA
GAGCCCAAGGCCAAGGCGCGCAAGACAGAGGCCCGAGGACTGAGCAAGGCCGGTGCCAAGAAGAAGG
GC
CGTAAGGAAGTGGCGCAGGCGAAGGAGGCCGAGGTGGAGGTGGAGGAGGTACCCAACACCGTCCTCAT
C
TGTATGGTGATCTTGCTGAACATCGGCCTGGCTATCCTATTTGTTCACCTCCTGACTTGA


Translation (696 aa):
MSGGRFDFDDGGAYCGGWEGGKAHGHGLCTGPKGQGEYSGSWNFGFEVAGVYTWPSGNTFEGYWSQGKRH
G
LGIETKGRWLYKGEWTHGFKGRYGIRQSTNSGAKYEGTWNNGLQDGYGTETYADG
GTYQGQFTNGMRHG
Y
GVRQSVPYGMAVVVRSPLRTSLSSLRSEHSNGTVAPDSPAADGPMLPSPPVPRGGFALTLLATAEAARP
Q
GLFTRGTLLGRLRRSESRTSLGSQRSRLSFLKSELSSGASDAASTGSLAEGAEGPDDAAAPFDADIDAT
T
TETYMGEWKNDKRSGFGVSERSSGLRYEGEWLDNLRHGYGRTTLPDGHREEGKYRHNVLVKGTKRRVLP
L
KSSKVRQKVEHGVEGAQRAAAIARQKAEIAAS
RTSHAKAKAEAAEQAALAANQESNIARTLAKELAPDF
Y
QP
GPEYQKRRLLQEILENSESLLEPPERGLGTGLPERPRESPQLHERETPQPEGGPPSPAGTPPQPKRP
R
PGASKDGLLSPGSWNGEPGGEGSRPATPSDGAGRRSPARPASEHMAIEALQPPPAPSQEPEVAMYRGYH
S
YAVRTGPPEPPPLEDEQEPEPEPEPEVRRSDSAPPSPVSATVPEEEPPAPRSPVPAKQATLEPKPIVPK
A
EPKAKARKTEARGLSKAGAKKKGRKEVAQAKEAEVEVEE
VPNTVLICMVILLNIGLAILFVHLLT



Links Key
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