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Report for CCDS15871.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15871.1 Public Mus musculus 2 Tbc1d13 23 108 98 CCDS HistoryNCBI Gene:70296Re-query CCDS DB by CCDS ID:15871.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15871.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044556.11 ENSMUSP00000048426.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044556.11Link to Ensembl Protein Viewer:ENSMUSP00000048426.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000044556Re-query CCDS DB by Protein ID:ENSMUSP00000048426
Original member NCBI NM_146252.3 NP_666364.1 Updated not alive Link to Nucleotide Sequence:NM_146252.3Link to Protein Sequence:NP_666364.1Re-query CCDS DB by Nucleotide ID:NM_146252Re-query CCDS DB by Protein ID:NP_666364
Current member NCBI NM_146252.4 NP_666364.1 Accepted alive Link to Nucleotide Sequence:NM_146252.4Link to Protein Sequence:NP_666364.1Re-query CCDS DB by Nucleotide ID:NM_146252Re-query CCDS DB by Protein ID:NP_666364Link to BLAST:NP_666364.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_666364.1 400 Q8R3D1 400 100% 0 0

Chromosomal Locations for CCDS 15871.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 30133890 30133912 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30134797 30134870 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30136673 30136713 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30137121 30137182 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30137282 30137381 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30140475 30140557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30142262 30142421 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30146652 30146862 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30147362 30147525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30148623 30148783 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30148931 30148988 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 30149700 30149765 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1203 nt):
ATGTCGAGTCTGCACAAGAGCCGGATTGCAGATTTCCAGGATGTCCTGAAGGAGCCCTCCATTGTGTTGG
AAAAGCTTCGAGAACTCAGTTTTAGTGGCATCCCCTGTGAGGGCGGACTGCGGTGCCTCTGCTGGAAGAT
CCTCCTGAACTACCTCCCTCTGGAGAGAGCCTCGTGGACTTCCATCCTGGCCAAGCAGAGGGGGCTCTAT
TCGCAGTTCCTGAGAGAGATGATTATCCAGCCTGGCATTGCCAAGGCCAACATGGGTGTATTCAGGGAGG
ATGTGACCTTTGAGGACCATCCTCTGAACCCAAACCCTGACAGCAGGTGGAACACATATTTTAAGGACAA
CGAGGTGCTACTCCAGATTGACAAAGATGTCAGGAGGTTGTGCCCAGATATATCTTTCTTCCAAAGAGCC
ACTGAGTACCCCTGCCTGCTCATCCTGGACCCGCAAAATGAGTTTGAGACCCTTCGTAAGCGGGTGGAGC
AGACGACACTGAAGTCTCAGACGGTGGCCAGGAATCGAAGCGGGGTTACAAATATGAGCTCCCCGCACAA
GAACAGTGCGCCATCAGCCCTGAACGAGTATGAGGTGCTACCCAATGGCTGCGAAGCCCACTGGGAGGTG
GTGGAGCGCATCCTGTTCATCTATGCCAAGCTCAACCCTGGCATCGCTTACGTGCAGGGCATGAATGAGA
TCGTGGGCCCCCTCTACTACACTTTTGCCACTGACCCTAACAGCGAGTGGAAAGAGCACGCTGAAGCAGA
TACCTTTTTCTGCTTCACCAACCTCATGGCTGAGATCCGGGACAACTTCATCAAGAGCCTGGATGACTCC
CAGTGCGGTATCACCTACAAGATGGAAAAGGTGTACTCCACCTTGAAGGATAAGGATGTAGAGCTCTACC
TGAAGCTGCAAGAGCAGAGTATCAAGCCTCAGTTCTTTGCCTTCCGATGGCTGACATTGCTGCTGTCCCA
GGAGTTCTTGCTGCCTGATGTCATCCGTATCTGGGACTCCCTCTTTGCTGATGGCAACCGATTCGATTTC
CTCCTCCTGGTCTGCTGTGCTATGCTCATACTGATCCGGGAGCAGTTACTGGAGGGGGACTTCACTGTCA
ACATGCGGCTTCTGCAGGATTACCCCATCACAGACGTCTGCCAGATCCTACAGAAAGCCAAGGAACTCCA
AGACTCGAAGTAA

Translation (400 aa):
MSSLHKSRIADFQDVLKEPSIVLEKLRELSFSGIPCEGGLRCLCWKILLNYLPLERASWTSILAKQRGLY
SQFLREMIIQPGIAKANMGVFREDVTFEDHPLNPNPDSRWNTYFKDNEVLLQIDKDVRRLCPDISFFQRA
TEYPCLLILDPQNEFETLRKRVEQTTLKSQTVARNRSGVTNMSSPHKNSAPSALNEYEVLPNGCEAHWEV
VERILFIYAKLNPGIAYVQGMNEIVGPLYYTFATDPNSEWKEHAEADTFFCFTNLMAEIRDNFIKSLDDS
QCGITYKMEKVYSTLKDKDVELYLKLQEQSIKPQFFAFRWLTLLLSQEFLLPDVIRIWDSLFADGNRFDF
LLLVCCAMLILIREQLLEGDFTVNMRLLQDYPITDVCQILQKAKELQDSK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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