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Report for CCDS15946.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
15946.1 Public Mus musculus 2 Mvb12b 23 108 98 CCDS HistoryNCBI Gene:72543Re-query CCDS DB by CCDS ID:15946.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 15946.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041555.9 ENSMUSP00000048901.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041555.9Link to Ensembl Protein Viewer:ENSMUSP00000048901.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000041555Re-query CCDS DB by Protein ID:ENSMUSP00000048901
Original member Current member NCBI NM_175184.4 NP_780393.2 Accepted alive Link to Nucleotide Sequence:NM_175184.4Link to Protein Sequence:NP_780393.2Re-query CCDS DB by Nucleotide ID:NM_175184Re-query CCDS DB by Protein ID:NP_780393Link to BLAST:NP_780393.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780393.2 317 Q6KAU4 317 100% 0 0

Chromosomal Locations for CCDS 15946.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 33733445 33733531 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33752309 33752368 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33754990 33755045 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33802745 33802839 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33825048 33825170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33827682 33827811 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33834537 33834633 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33840159 33840266 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33874338 33874460 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 33887320 33887394 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (954 nt):
ATGAGAAGCTGCTTCTGCGTCAGACGGAGCCGGGACCCGCCGCCGCCGCAGCCGCCGCCGCCCCAGCGGG
GAACAGACCAAGCCACCATGCCCGAAGTCAAGGAGCTTTCAGAAGCCTTGCCAGAGACACCGATGGACCC
CATCACGGGAGTTGGGGTGGTGGCTTCCCGGAACCGAGCACCAACAGGCTACGACGTGGTTGCGCAGACA
GCAGATGGCGTGGATGCTGATCTCTGGAAGGACGGCTTATTCAAGTCCAAGGTTACCAGATACCTGTGTT
TCACAAGATCATTTTCTAAAGAAAATAGTCATTTGGGGAATGTGCTGGTGGACATGAAGCTCATCGATGT
CAAGGACACATTGCCTGTGGGCTTCATCCCCATCCAAGAGACCGTGGATACACAGGAGGTGGTCTTTAGG
AAGAAGCGGCTCTGCATTAAGTTTATCCCCCGGGATTCAACTGAAGCTGCCATCTGTGACATTCGCATCA
TGGGCCGGACCAAGCAGGCACCGCCCCAGTACACGTTTATCGGGGAACTGAACAGCATGGGCATCTGGTA
CCGAATGGGCAGAGTGCCAAGAAACCATGACTCGTCTCAGCCCACCACGCCCTCCCAGTCATCAGCCTCT
TCTACCCCAGCCCCAAACCTTCCCAGGCACATCTCCCTAACACTACCGGCTACCTTCCGGGGCAGAAACA
ACACCAGCACAGACTATGAGTACCAGCTCTCCAATCTATATGCCATATCAGCAATGGATGGTGTGCCTTT
TATGATTTCAGAGAAGTTTTCCTGCATTCCAGAAAGTATGCAGCCCTTTGATCTCTTGGGAATCACCATC
AAGTCTCTGGCAGAAATTGAAAAGGAGTACGAGTACAGCTTCCGCACCGAGCAGAGCGCAGCAGCTCGAC
TCCCACCCAGCCCTACCCGGTGCCAGCAGATCCCCCAATCCTGA

Translation (317 aa):
MRSCFCVRRSRDPPPPQPPPPQRGTDQATMPEVKELSEALPETPMDPITGVGVVASRNRAPTGYDVVAQT
ADGVDADLWKDGLFKSKVTRYLCFTRSFSKENSHLGNVLVDMKLIDVKDTLPVGFIPIQETVDTQEVVFR
KKRLCIKFIPRDSTEAAICDIRIMGRTKQAPPQYTFIGELNSMGIWYRMGRVPRNHDSSQPTTPSQSSAS
STPAPNLPRHISLTLPATFRGRNNTSTDYEYQLSNLYAISAMDGVPFMISEKFSCIPESMQPFDLLGITI
KSLAEIEKEYEYSFRTEQSAAARLPPSPTRCQQIPQS


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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