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Report for CCDS50710.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
50710.1 Public Mus musculus 2 1700020A23Rik 23 108 98 CCDS HistoryNCBI Gene:75656Re-query CCDS DB by CCDS ID:50710.1See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 50710.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028898.4 ENSMUSP00000028898.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028898.4Link to Ensembl Protein Viewer:ENSMUSP00000028898.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000028898Re-query CCDS DB by Protein ID:ENSMUSP00000028898
Original member Current member EBI ENSMUST00000110281.1 ENSMUSP00000105910.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000110281.1Link to Ensembl Protein Viewer:ENSMUSP00000105910.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000110281Re-query CCDS DB by Protein ID:ENSMUSP00000105910
Original member Current member EBI ENSMUST00000189961.1 ENSMUSP00000140511.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000189961.1Link to Ensembl Protein Viewer:ENSMUSP00000140511.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000189961Re-query CCDS DB by Protein ID:ENSMUSP00000140511
Original member Current member NCBI NM_001163483.1 NP_001156955.1 Accepted alive Link to Nucleotide Sequence:NM_001163483.1Link to Protein Sequence:NP_001156955.1Re-query CCDS DB by Nucleotide ID:NM_001163483Re-query CCDS DB by Protein ID:NP_001156955Link to BLAST:NP_001156955.1
Original member Current member NCBI NM_029375.1 NP_083651.1 Accepted alive Link to Nucleotide Sequence:NM_029375.1Link to Protein Sequence:NP_083651.1Re-query CCDS DB by Nucleotide ID:NM_029375Re-query CCDS DB by Protein ID:NP_083651Link to BLAST:NP_083651.1

Chromosomal Locations for CCDS 50710.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 130405546 130405703 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 130405781 130406018 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (396 nt):
ATGTGCCCCCCCTGGGACTTCAGCCAGGCCCAGCTCCTGGACAGTATCCTAGGGCTGGGGGCACTAGGAG
TGACAATTCGAACCATCTTCTCAACGGCTGGCCTAGCCCTGCTGCTCCTGTTGCTGACCAGCTTCCTTGT
TTTTGACCTGCTCTATGGGCCCACAGGTGCCAACCTGCCACGACACAGACTTCTCCCAATGGGTCAGAGC
CAGGGGGCTGGTGAAGGCCCAGGACAGCAAGCAGCTCCCCTCTCTCCAACAAAGATGGCCTCGGGACTGC
TCAGCCTGCAGGATGCGCTGCTCCTGCTGTTCCTGGGCCTGCGCCTGTTCTTGGGAGGCTCTGGTATACC
CTTAGCCATGCTGGGCCTAGCTTTCTGTATCCATCCTTGGGCCTGA

Translation (131 aa):
MCPPWDFSQAQLLDSILGLGALGVTIRTIFSTAGLALLLLLLTSFLVFDLLYGPTGANLPRHRLLPMGQS
QGAGEGPGQQAAPLSPTKMASGLLSLQDALLLLFLGLRLFLGGSGIPLAMLGLAFCIHPWA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
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