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Report for CCDS10083.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
10083.1 Public Homo sapiens 15 VPS39 24 110 108 CCDS HistoryNCBI Gene:23339Re-query CCDS DB by CCDS ID:10083.1Re-query CCDS DB by GeneID:23339See the combined annotation on chromosome 15 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 10083.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000318006.10 ENSP00000326534.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000318006.10Link to Ensembl Protein Viewer:ENSP00000326534.5Re-query CCDS DB by Nucleotide ID:ENST00000318006Re-query CCDS DB by Protein ID:ENSP00000326534
Original member Current member NCBI NM_015289.5 NP_056104.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_015289.5Link to Protein Sequence:NP_056104.2Re-query CCDS DB by Nucleotide ID:NM_015289Re-query CCDS DB by Protein ID:NP_056104Link to BLAST:NP_056104.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_056104.2 875 Q96JC1-2 875 100% 0 0

Chromosomal Locations for CCDS 10083.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 15 (NC_000015.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15See the combined annotation on chromosome 15 in Sequence Viewer

Chromosome Start Stop Links
15 42160754 42160829 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42161682 42161773 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42162032 42162166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42162332 42162481 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42163350 42163395 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42163626 42163728 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42164358 42164486 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42164996 42165113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42165718 42165816 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42166159 42166232 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42166563 42166649 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42166772 42166913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42167394 42167537 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42169724 42169866 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42173723 42173852 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42178218 42178338 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42178450 42178570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42184517 42184700 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42187271 42187363 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42187758 42187856 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42189114 42189208 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42191125 42191167 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42191496 42191560 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42199896 42199961 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15
15 42208081 42208153 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 15Link to Ensembl Genome Browser on chromosome 15

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2628 nt):
ATGCACGACGCTTTCGAGCCAGTGCCGATCCTAGAAAAGCTGCCTCTGCAAATCGACTGTCTGGCTGCCT
GGGAGGAATGGCTTCTTGTGGGAACCAAACAAGGACATCTTCTTCTCTATAGGATTCGGAAGGACGTTGG
TTGCAACAGATTTGAAGTGACACTAGAGAAATCCAATAAGAACTTCTCCAAAAAGATTCAGCAGATCCAT
GTGGTTTCCCAGTTTAAGATTCTGGTCAGCTTGTTAGAAAATAACATTTATGTCCATGACCTATTGACAT
TTCAACAAATCACTACGGTTTCAAAGGCAAAGGGAGCATCACTGTTTACTTGTGACCTCCAGCACACAGA
GACCGGTGAGGAGGTGTTACGGATGTGTGTGGCAGTAAAAAAGAAGCTGCAGCTCTATTTCTGGAAGGAC
AGGGAATTTCATGAATTGCAGGGGGACTTTAGTGTGCCAGATGTGCCCAAGTCCATGGCGTGGTGTGAAA
ATTCTATCTGTGTGGGTTTCAAGAGAGACTACTACCTAATAAGGGTGGATGGAAAGGGGTCCATCAAAGA
GCTCTTTCCAACAGGAAAACAGCTGGAGCCCTTAGTTGCACCTCTGGCAGATGGAAAAGTGGCTGTGGGC
CAGGATGATCTCACCGTGGTACTCAATGAGGAAGGGATCTGCACACAGAAATGTGCCCTGAACTGGACGG
ACATACCAGTGGCCATGGAGCACCAGCCTCCCTACATCATTGCAGTGTTGCCTCGATATGTTGAGATCCG
AACATTTGAACCGAGGCTTCTGGTCCAAAGCATTGAATTGCAAAGGCCCCGTTTCATTACCTCAGGAGGA
TCAAACATTATCTATGTGGCCAGCAATCATTTTGTTTGGAGACTCATCCCTGTCCCCATGGCAACCCAAA
TCCAACAACTTCTCCAGGACAAGCAGTTTGAATTGGCTCTGCAGCTCGCAGAAATGAAAGATGATTCTGA
CAGTGAAAAGCAGCAACAAATTCATCACATCAAGAACTTGTATGCCTTCAACCTCTTCTGCCAGAAGCGT
TTTGATGAGTCCATGCAGGTCTTTGCTAAACTTGGCACAGATCCCACCCATGTGATGGGCCTGTACCCTG
ACCTGCTGCCCACAGACTACAGAAAGCAGTTGCAGTATCCCAACCCATTGCCTGTGCTCTCCGGGGCTGA
ATTGGAGAAGGCTCACTTAGCTCTGATTGACTACCTGACACAGAAACGAAGTCAATTGGTAAAGAAGCTG
AATGACTCTGATCACCAGTCAAGCACCTCACCGCTCATGGAAGGCACTCCCACCATCAAATCCAAGAAGA
AGCTGCTACAAATCATCGACACCACCCTGCTCAAGTGCTATCTCCATACAAATGTGGCCCTGGTGGCCCC
CTTGCTACGCCTGGAGAACAATCACTGCCACATCGAGGAGAGCGAGCACGTGCTAAAGAAGGCTCACAAG
TACAGTGAGCTTATCATCCTGTATGAGAAGAAGGGGCTCCACGAGAAAGCTCTGCAGGTGCTCGTGGACC
AGTCCAAGAAAGCCAACTCCCCTCTGAAAGGCCACGAGAGGACAGTGCAGTATCTGCAGCATCTGGGCAC
AGAAAACCTGCATTTGATTTTCTCCTACTCAGTGTGGGTGCTGAGAGACTTCCCAGAAGATGGCCTGAAG
ATATTTACTGAAGATCTCCCGGAAGTGGAGTCTCTGCCACGTGATCGAGTCCTCGGCTTCTTAATAGAGA
ATTTTAAGGGTCTGGCTATTCCTTATCTGGAACACATCATCCATGTTTGGGAGGAGACAGGCTCTCGGTT
CCACAACTGCCTGATCCAGCTATACTGTGAGAAGGTGCAAGGTCTGATGAAGGAGTATCTCCTGTCCTTC
CCTGCAGGCAAAACCCCAGTCCCAGCTGGAGAGGAAGAGGGTGAGCTGGGAGAATACCGGCAAAAGCTCC
TCATGTTCTTGGAGATTTCCAGCTACTATGATCCAGGCCGGCTCATCTGTGATTTTCCCTTTGATGGCCT
CTTAGAAGAACGAGCTCTCCTGTTGGGGCGCATGGGGAAACATGAACAAGCTCTTTTCATTTATGTCCAC
ATCTTGAAGGATACAAGGATGGCTGAGGAGTACTGCCACAAACACTATGACCGAAACAAAGATGGCAACA
AAGATGTGTATCTGTCCCTGCTTCGGATGTACCTGTCGCCCCCCAGCATTCACTGCCTGGGGCCAATCAA
GCTGGAACTACTGGAGCCAAAAGCCAACCTCCAGGCCGCTCTGCAGGTCCTCGAGCTACACCACAGCAAA
CTGGACACCACCAAGGCCCTCAACCTTCTGCCAGCAAACACTCAGATCAATGACATACGCATCTTCCTGG
AAAAGGTCTTGGAAGAAAATGCACAAAAGAAACGGTTCAATCAAGTGCTCAAGAACCTTCTCCATGCAGA
ATTCCTGAGGGTCCAGGAAGAGCGGATTTTACACCAGCAGGTGAAGTGCATCATCACAGAGGAGAAGGTG
TGCATGGTGTGTAAGAAGAAGATTGGGAACAGTGCATTTGCAAGATACCCCAATGGAGTGGTCGTCCATT
ACTTCTGTTCCAAAGAGGTAAACCCAGCTGACACTTGA

Translation (875 aa):
MHDAFEPVPILEKLPLQIDCLAAWEEWLLVGTKQGHLLLYRIRKDVGCNRFEVTLEKSNKNFSKKIQQIH
VVSQFKILVSLLENNIYVHDLLTFQQITTVSKAKGASLFTCDLQHTETGEEVLRMCVAVKKKLQLYFWKD
REFHELQGDFSVPDVPKSMAWCENSICVGFKRDYYLIRVDGKGSIKELFPTGKQLEPLVAPLADGKVAVG
QDDLTVVLNEEGICTQKCALNWTDIPVAMEHQPPYIIAVLPRYVEIRTFEPRLLVQSIELQRPRFITSGG
SNIIYVASNHFVWRLIPVPMATQIQQLLQDKQFELALQLAEMKDDSDSEKQQQIHHIKNLYAFNLFCQKR
FDESMQVFAKLGTDPTHVMGLYPDLLPTDYRKQLQYPNPLPVLSGAELEKAHLALIDYLTQKRSQLVKKL
NDSDHQSSTSPLMEGTPTIKSKKKLLQIIDTTLLKCYLHTNVALVAPLLRLENNHCHIEESEHVLKKAHK
YSELIILYEKKGLHEKALQVLVDQSKKANSPLKGHERTVQYLQHLGTENLHLIFSYSVWVLRDFPEDGLK
IFTEDLPEVESLPRDRVLGFLIENFKGLAIPYLEHIIHVWEETGSRFHNCLIQLYCEKVQGLMKEYLLSF
PAGKTPVPAGEEEGELGEYRQKLLMFLEISSYYDPGRLICDFPFDGLLEERALLLGRMGKHEQALFIYVH
ILKDTRMAEEYCHKHYDRNKDGNKDVYLSLLRMYLSPPSIHCLGPIKLELLEPKANLQAALQVLELHHSK
LDTTKALNLLPANTQINDIRIFLEKVLEENAQKKRFNQVLKNLLHAEFLRVQEERILHQQVKCIITEEKV
CMVCKKKIGNSAFARYPNGVVVHYFCSKEVNPADT


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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