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Report for CCDS11716.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
11716.1 Public Homo sapiens 17 GGA3 24 110 108 CCDS HistoryNCBI Gene:23163Re-query CCDS DB by CCDS ID:11716.1Re-query CCDS DB by GeneID:23163See the combined annotation on chromosome 17 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 11716.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000538886.5 ENSP00000446421.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000538886.5Link to Ensembl Protein Viewer:ENSP00000446421.2Re-query CCDS DB by Nucleotide ID:ENST00000538886Re-query CCDS DB by Protein ID:ENSP00000446421
Original member Current member NCBI NM_014001.5 NP_054720.1 Accepted alive Link to Nucleotide Sequence:NM_014001.5Link to Protein Sequence:NP_054720.1Re-query CCDS DB by Nucleotide ID:NM_014001Re-query CCDS DB by Protein ID:NP_054720Link to BLAST:NP_054720.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_054720.1 690 Q9NZ52-2 690 100% 0 0

Chromosomal Locations for CCDS 11716.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 17 (NC_000017.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17See the combined annotation on chromosome 17 in Sequence Viewer

Chromosome Start Stop Links
17 75238279 75238389 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75238652 75238762 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75238914 75239083 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75239375 75239571 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75239789 75240108 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75240342 75240412 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75240812 75241057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75241400 75241516 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75241615 75241696 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75242336 75242473 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75242831 75242911 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75243063 75243166 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75243447 75243570 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75246509 75246584 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75246712 75246796 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17
17 75261548 75261587 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 17Link to Ensembl Genome Browser on chromosome 17

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2073 nt):
ATGGCGGAGGCGGAAGGGGAAAGCCTGGAGTCCTGGCTCAATAAAGCCACCAATCCTTCCAACCGCCAGG
AGGACTGGGAATACATAATTGGCTTCTGTGATCAGATCAACAAGGAGCTGGAAGGGCCACAGATCGCCGT
CCGACTGCTGGCCCACAAGATCCAGTCCCCACAGGAATGGGAGGCGCTCCAGGCCCTGACGTACCTGGGG
GACAGGGTGTCTGAGAAAGTGAAGACCAAGGTTATTGAGCTGCTGTACAGCTGGACCATGGCCCTGCCAG
AAGAAGCAAAGATCAAAGACGCCTACCACATGCTGAAGAGACAGGGCATAGTGCAGTCTGACCCACCAAT
TCCTGTGGATAGGACGCTGATCCCCTCTCCACCACCTCGTCCCAAAAACCCTGTTTTTGATGATGAGGAG
AAGTCCAAGCTTTTAGCCAAGCTGCTGAAAAGCAAAAACCCAGATGACCTGCAGGAGGCCAACAAGCTCA
TCAAGTCCATGGTGAAGGAAGACGAGGCACGGATCCAGAAGGTGACCAAGCGTCTGCACACGTTAGAGGA
AGTTAACAACAACGTGAGACTGCTCAGTGAGATGCTGCTTCATTACAGCCAGGAGGACTCTTCGGACGGG
GACAGAGAGCTGATGAAGGAGCTGTTTGATCAGTGTGAGAACAAGAGGCGGACTTTATTTAAACTCGCCA
GTGAGACTGAGGACAATGATAACAGTTTGGGGGACATCCTGCAAGCCAGTGACAACCTCTCCCGGGTCAT
CAACTCTTACAAAACAATTATTGAAGGGCAGGTCATCAATGGCGAGGTGGCTACCTTAACCCTGCCTGAC
TCGGAAGGAAACAGTCAGTGCAGTAACCAAGGCACGCTCATCGACCTTGCGGAGCTGGACACGACCAACA
GTTTGTCCTCCGTGTTGGCCCCAGCACCTACTCCACCCTCCTCAGGCATCCCAATCCTCCCTCCACCACC
CCAGGCCTCAGGACCTCCACGGAGCCGCTCCTCTAGCCAGGCCGAGGCCACCCTGGGGCCCAGCAGCACA
AGCAACGCCCTCTCCTGGCTGGACGAGGAGCTACTCTGCTTGGGCCTCGCCGACCCAGCCCCTAATGTTC
CTCCCAAAGAGTCAGCTGGGAACAGCCAGTGGCACCTGCTCCAGAGGGAACAGTCCGACCTGGACTTCTT
CAGCCCCAGGCCGGGGACCGCTGCCTGTGGCGCCTCCGATGCTCCTCTGCTCCAGCCCTCAGCCCCCTCC
TCAAGCAGCTCCCAAGCTCCACTGCCGCCTCCCTTCCCAGCTCCTGTGGTCCCAGCCAGTGTTCCTGCCC
CCAGTGCGGGCTCCTCCTTGTTTTCTACTGGAGTGGCCCCAGCCTTGGCCCCAAAAGTTGAGCCCGCAGT
CCCTGGGCACCATGGCTTGGCGTTGGGCAACAGCGCGCTGCACCACCTGGATGCCCTCGATCAGCTTCTA
GAAGAGGCCAAAGTGACCTCGGGCTTGGTGAAACCCACTACCTCCCCTCTCATCCCCACCACCACCCCAG
CCAGGCCCCTCCTGCCCTTCTCCACGGGGCCCGGCAGCCCGCTCTTCCAGCCACTGAGTTTCCAGTCCCA
GGGCAGCCCCCCGAAGGGGCCTGAGCTCTCCCTGGCCAGCATCCACGTGCCCCTGGAATCGATCAAGCCT
AGCAGTGCCCTTCCTGTGACAGCCTACGATAAAAACGGCTTCCGCATCCTCTTCCACTTTGCCAAGGAGT
GTCCCCCAGGACGACCTGACGTGCTGGTGGTGGTGGTGTCCATGCTGAACACGGCTCCCTTACCTGTCAA
GAGCATCGTGCTGCAGGCTGCAGTGCCCAAGTCAATGAAAGTGAAGTTGCAGCCACCTTCTGGGACAGAA
CTCTCTCCATTTAGCCCCATCCAGCCACCTGCAGCCATCACCCAGGTCATGTTGCTGGCCAATCCACTGA
AGGAGAAGGTGCGGCTTCGGTATAAGCTGACCTTCGCCCTGGGGGAGCAGCTGAGCACAGAGGTGGGCGA
GGTGGACCAGTTCCCTCCTGTGGAACAGTGGGGGAACCTATGA

Translation (690 aa):
MAEAEGESLESWLNKATNPSNRQEDWEYIIGFCDQINKELEGPQIAVRLLAHKIQSPQEWEALQALTYLG
DRVSEKVKTKVIELLYSWTMALPEEAKIKDAYHMLKRQGIVQSDPPIPVDRTLIPSPPPRPKNPVFDDEE
KSKLLAKLLKSKNPDDLQEANKLIKSMVKEDEARIQKVTKRLHTLEEVNNNVRLLSEMLLHYSQEDSSDG
DRELMKELFDQCENKRRTLFKLASETEDNDNSLGDILQASDNLSRVINSYKTIIEGQVINGEVATLTLPD
SEGNSQCSNQGTLIDLAELDTTNSLSSVLAPAPTPPSSGIPILPPPPQASGPPRSRSSSQAEATLGPSST
SNALSWLDEELLCLGLADPAPNVPPKESAGNSQWHLLQREQSDLDFFSPRPGTAACGASDAPLLQPSAPS
SSSSQAPLPPPFPAPVVPASVPAPSAGSSLFSTGVAPALAPKVEPAVPGHHGLALGNSALHHLDALDQLL
EEAKVTSGLVKPTTSPLIPTTTPARPLLPFSTGPGSPLFQPLSFQSQGSPPKGPELSLASIHVPLESIKP
SSALPVTAYDKNGFRILFHFAKECPPGRPDVLVVVVSMLNTAPLPVKSIVLQAAVPKSMKVKLQPPSGTE
LSPFSPIQPPAAITQVMLLANPLKEKVRLRYKLTFALGEQLSTEVGEVDQFPPVEQWGNL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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