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Report for CCDS16440.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16440.1 Public Mus musculus 2 Mdk 23 108 98 CCDS HistoryNCBI Gene:17242Re-query CCDS DB by CCDS ID:16440.1Re-query CCDS DB by GeneID:17242See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16440.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028672.12 ENSMUSP00000028672.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028672.12Link to Ensembl Protein Viewer:ENSMUSP00000028672.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000028672Re-query CCDS DB by Protein ID:ENSMUSP00000028672
Original member Current member EBI ENSMUST00000069423.12 ENSMUSP00000068413.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000069423.12Link to Ensembl Protein Viewer:ENSMUSP00000068413.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000069423Re-query CCDS DB by Protein ID:ENSMUSP00000068413
Original member Current member EBI ENSMUST00000090602.5 ENSMUSP00000088090.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000090602.5Link to Ensembl Protein Viewer:ENSMUSP00000088090.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000090602Re-query CCDS DB by Protein ID:ENSMUSP00000088090
Original member Current member EBI ENSMUST00000111309.7 ENSMUSP00000106941.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000111309.7Link to Ensembl Protein Viewer:ENSMUSP00000106941.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000111309Re-query CCDS DB by Protein ID:ENSMUSP00000106941
Original member NCBI NM_001012335.2 NP_001012335.1 Updated not alive Link to Nucleotide Sequence:NM_001012335.2Link to Protein Sequence:NP_001012335.1Re-query CCDS DB by Nucleotide ID:NM_001012335Re-query CCDS DB by Protein ID:NP_001012335
Current member NCBI NM_001012335.3 NP_001012335.1 Accepted alive Link to Nucleotide Sequence:NM_001012335.3Link to Protein Sequence:NP_001012335.1Re-query CCDS DB by Nucleotide ID:NM_001012335Re-query CCDS DB by Protein ID:NP_001012335Link to BLAST:NP_001012335.1
Original member NCBI NM_001012336.2 NP_001012336.1 Updated not alive Link to Nucleotide Sequence:NM_001012336.2Link to Protein Sequence:NP_001012336.1Re-query CCDS DB by Nucleotide ID:NM_001012336Re-query CCDS DB by Protein ID:NP_001012336
Current member NCBI NM_001012336.3 NP_001012336.1 Accepted alive Link to Nucleotide Sequence:NM_001012336.3Link to Protein Sequence:NP_001012336.1Re-query CCDS DB by Nucleotide ID:NM_001012336Re-query CCDS DB by Protein ID:NP_001012336Link to BLAST:NP_001012336.1
Original member NCBI NM_001291481.1 NP_001278410.1 Updated not alive Link to Nucleotide Sequence:NM_001291481.1Link to Protein Sequence:NP_001278410.1Re-query CCDS DB by Nucleotide ID:NM_001291481Re-query CCDS DB by Protein ID:NP_001278410
Current member NCBI NM_001291481.2 NP_001278410.1 Accepted alive Link to Nucleotide Sequence:NM_001291481.2Link to Protein Sequence:NP_001278410.1Re-query CCDS DB by Nucleotide ID:NM_001291481Re-query CCDS DB by Protein ID:NP_001278410Link to BLAST:NP_001278410.1
Original member NCBI NM_010784.5 NP_034914.1 Updated not alive Link to Nucleotide Sequence:NM_010784.5Link to Protein Sequence:NP_034914.1Re-query CCDS DB by Nucleotide ID:NM_010784Re-query CCDS DB by Protein ID:NP_034914
Current member NCBI NM_010784.6 NP_034914.1 Accepted alive Link to Nucleotide Sequence:NM_010784.6Link to Protein Sequence:NP_034914.1Re-query CCDS DB by Nucleotide ID:NM_010784Re-query CCDS DB by Protein ID:NP_034914Link to BLAST:NP_034914.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001012335.1 140 P12025 140 100% 0 0
NP_001012336.1 140 P12025 140 100% 0 0
NP_001278410.1 140 P12025 140 100% 0 0
NP_034914.1 140 P12025 140 100% 0 0

Chromosomal Locations for CCDS 16440.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 91930090 91930115 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91930818 91930979 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91931096 91931254 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 91931372 91931447 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (423 nt):
ATGCAGCACCGAGGCTTCTTCCTTCTCGCCCTTCTTGCCCTCTTGGTGGTCACGTCCGCGGTGGCCAAAA
AAAAAGAGAAGGTGAAGAAGGGCAGCGAGTGTTCGGAGTGGACCTGGGGGCCCTGCACCCCCAGCAGCAA
GGACTGCGGCATGGGCTTCCGCGAGGGTACCTGTGGGGCCCAGACCCAGCGCGTCCATTGCAAGGTGCCC
TGCAACTGGAAGAAGGAATTTGGAGCCGACTGCAAATACAAGTTTGAGAGCTGGGGGGCGTGTGATGGGA
GCACTGGCACCAAAGCCCGCCAAGGGACCCTGAAGAAGGCGCGGTACAATGCCCAGTGCCAGGAGACCAT
CCGCGTGACTAAGCCCTGCACCTCCAAGACCAAGTCAAAGACCAAAGCCAAGAAAGGAAAAGGAAAGGAC
TAA

Translation (140 aa):
MQHRGFFLLALLALLVVTSAVAKKKEKVKKGSECSEWTWGPCTPSSKDCGMGFREGTCGAQTQRVHCKVP
CNWKKEFGADCKYKFESWGACDGSTGTKARQGTLKKARYNAQCQETIRVTKPCTSKTKSKTKAKKGKGKD


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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