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Report for CCDS16679.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
16679.1 Public Mus musculus 2 Cops2 23 108 98 CCDS HistoryNCBI Gene:12848Re-query CCDS DB by CCDS ID:16679.1Re-query CCDS DB by GeneID:12848See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 16679.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000028635.5 ENSMUSP00000028635.5 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000028635.5Link to Ensembl Protein Viewer:ENSMUSP00000028635.5Re-query CCDS DB by Nucleotide ID:ENSMUST00000028635Re-query CCDS DB by Protein ID:ENSMUSP00000028635
Original member Current member NCBI NM_009939.3 NP_034069.2 Accepted alive Link to Nucleotide Sequence:NM_009939.3Link to Protein Sequence:NP_034069.2Re-query CCDS DB by Nucleotide ID:NM_009939Re-query CCDS DB by Protein ID:NP_034069Link to BLAST:NP_034069.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034069.2 443 P61202-1 443 100% 0 0

Chromosomal Locations for CCDS 16679.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 125832193 125832337 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125833724 125833782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125834754 125834836 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125836142 125836239 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125839149 125839201 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125839306 125839484 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125840324 125840498 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125842433 125842510 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125842622 125842711 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125844810 125844935 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125848207 125848284 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125849740 125849853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 125858936 125858989 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1332 nt):
ATGTCTGACATGGAGGATGATTTCATGTGCGATGATGAGGAGGACTACGACCTGGAGTACTCTGAAGACA
GTAACTCTGAGCCCAATGTGGATTTGGAAAATCAGTACTATAATTCCAAAGCACTGAAAGAAGATGACCC
AAAAGCAGCATTAAGCAGCTTCCAAAAGGTTTTGGAGCTTGAAGGTGAGAAGGGAGAATGGGGATTCAAA
GCGCTAAAACAGATGATCAAGATTAACTTCAAGTTGACAAACTTTCCAGAAATGATGAACAGATATAAGC
AACTATTGACCTATATTCGGAGTGCAGTCACCAGGAACTATTCTGAAAAGTCCATTAATTCTATCCTTGA
TTATATCTCCACTTCTAAACAGATGGATTTACTGCAGGAATTTTATGAAACAACACTGGAAGCTTTGAAA
GATGCTAAGAATGATAGACTGTGGTTTAAGACAAACACAAAGCTTGGAAAATTATATTTAGAACGAGAAG
AATATGGAAAGCTTCAAAAAATTTTACGACAGTTACATCAGTCTTGTCAGACTGATGATGGAGAAGATGA
CCTGAAAAAAGGTACCCAGTTATTAGAAATCTATGCTTTGGAAATTCAAATGTACACTGCACAGAAGAAC
AACAAAAAGCTTAAAGCACTCTATGAGCAATCACTTCACATCAAGTCTGCCATCCCTCACCCACTAATCA
TGGGTGTCATCAGAGAATGCGGTGGTAAGATGCACTTGAGAGAAGGTGAATTTGAAAAGGCACACACTGA
TTTTTTTGAAGCCTTCAAGAATTATGATGAATCAGGAAGCCCAAGACGAACCACTTGTTTAAAATATTTG
GTTTTAGCAAATATGCTAATGAAATCAGGAATAAATCCGTTTGACTCACAAGAGGCCAAGCCGTATAAAA
ATGATCCAGAAATTCTAGCAATGACAAATTTAGTAAGTGCCTATCAGAATAATGACATCACTGAATTTGA
AAAGATTCTGAAAACAAATCACAGCAACATCATGGATGATCCTTTCATAAGAGAGCACATTGAAGAACTT
TTACGAAACATCAGAACACAAGTCCTCATAAAGTTAATTAAGCCTTACACAAGAATACATATTCCTTTTA
TTTCTAAGGAGCTAAACATAGACGTAGCTGATGTGGAGAGCTTGCTGGTGCAGTGCATACTGGATAACAC
TATTCATGGCCGAATTGATCAAGTCAACCAGCTCCTTGAACTGGATCATCAGAAGAGGGGTGGTGCCCGA
TACACTGCGCTAGATAAATGGACCAACCAACTAAATTCTCTGAACCAGGCTGTGGTCAGTAAACTGGCTT
AA

Translation (443 aa):
MSDMEDDFMCDDEEDYDLEYSEDSNSEPNVDLENQYYNSKALKEDDPKAALSSFQKVLELEGEKGEWGFK
ALKQMIKINFKLTNFPEMMNRYKQLLTYIRSAVTRNYSEKSINSILDYISTSKQMDLLQEFYETTLEALK
DAKNDRLWFKTNTKLGKLYLEREEYGKLQKILRQLHQSCQTDDGEDDLKKGTQLLEIYALEIQMYTAQKN
NKKLKALYEQSLHIKSAIPHPLIMGVIRECGGKMHLREGEFEKAHTDFFEAFKNYDESGSPRRTTCLKYL
VLANMLMKSGINPFDSQEAKPYKNDPEILAMTNLVSAYQNNDITEFEKILKTNHSNIMDDPFIREHIEEL
LRNIRTQVLIKLIKPYTRIHIPFISKELNIDVADVESLLVQCILDNTIHGRIDQVNQLLELDHQKRGGAR
YTALDKWTNQLNSLNQAVVSKLA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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