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Report for CCDS23893.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
23893.1 Public Mus musculus 10 Slc25a16 23 108 98 CCDS HistoryNCBI Gene:73132Re-query CCDS DB by CCDS ID:23893.1Re-query CCDS DB by GeneID:73132See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 23893.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000044977.9 ENSMUSP00000043370.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000044977.9Link to Ensembl Protein Viewer:ENSMUSP00000043370.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000044977Re-query CCDS DB by Protein ID:ENSMUSP00000043370
Original member NCBI NM_175194.2 NP_780403.1 Updated not alive Link to Nucleotide Sequence:NM_175194.2Link to Protein Sequence:NP_780403.1Re-query CCDS DB by Nucleotide ID:NM_175194Re-query CCDS DB by Protein ID:NP_780403
Current member NCBI NM_175194.3 NP_780403.1 Accepted alive Link to Nucleotide Sequence:NM_175194.3Link to Protein Sequence:NP_780403.1Re-query CCDS DB by Nucleotide ID:NM_175194Re-query CCDS DB by Protein ID:NP_780403Link to BLAST:NP_780403.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_780403.1 332 Q8C0K5-1 332 100% 0 0

Chromosomal Locations for CCDS 23893.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 62920752 62920881 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62928296 62928388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62930303 62930436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62932719 62932782 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62937418 62937539 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62937928 62937994 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62941042 62941204 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62942651 62942719 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 62944315 62944471 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (999 nt):
ATGGCGGCCCTGGTGGCTGCGGCGGCCCTGGCGGCGGCCGAGCCTGCACCCGCGGTGCCGCAGGCGGCTG
GGAGCGGGGGCCCGACCTCACGCCGAGACTTCTACTGGCTGCGTTCCTTCTTGGCCGGAGGTATTGCTGG
ATGCTGTGCCAAAACCACAGTTGCCCCCCTGGACCGAGTGAAAGTTTTATTACAAGCTCACAACCGTCAT
TACAAACATTTAGGGGTACTTTCCACACTGCGTGCTGTTCCCCAAAAGGAAGGCTATCTTGGACTGTATA
AAGGAAACGGTGCAATGATGATTCGGATCTTTCCCTACGGTGCAATCCAGTTCATGGCCTTCGAGCATTA
TAAAACGTTCATTACTACAAAGCTGGGAGTTTCTGGTCATGTGCACAGATTAATGGCTGGATCCATGGCA
GGCATGACAGCGGTTATCTGCACTTACCCTCTCGATGTGGTCAGGGTGCGCCTGGCCTTCCAGGTGAAAG
GAGAGCACACCTATTCAGGGATCATCCATGCCTTCAAGACAATCTATGCCAAGGAAGGTGGTTTCCTTGG
ATTCTACCGAGGTCTGATGCCTACTATATTAGGAATGGCTCCATATGCAGGTGTCTCCTTTTTTACCTTT
GGTACCTTGAAGAGTGTTGGGCTTTCCTATGCTCCTGCCCTGCTTGGCCGACCTTCGTCCGACAACCCCA
ATGTCTTAGTTTTGAAAACTCACATAAACCTCCTCTGTGGTGGTGTTGCTGGAGCAATAGCACAGACGAT
ATCCTACCCATTTGATGTGACCCGACGGAGAATGCAGTTAGGGGCAGTCCTGCCGGAGTTTGAGAAGTGC
CTTACCATGCGGGAGACCATGAAGTACGTCTATGGACAGCATGGGATTCGGAGAGGATTGTACCGTGGCT
TATCTCTGAACTACATCCGCTGTATCCCCTCTCAAGCTGTGGCTTTCACAACGTATGAGCTGATGAAGCA
ATTTTTTCACCTTAACTGA

Translation (332 aa):
MAALVAAAALAAAEPAPAVPQAAGSGGPTSRRDFYWLRSFLAGGIAGCCAKTTVAPLDRVKVLLQAHNRH
YKHLGVLSTLRAVPQKEGYLGLYKGNGAMMIRIFPYGAIQFMAFEHYKTFITTKLGVSGHVHRLMAGSMA
GMTAVICTYPLDVVRVRLAFQVKGEHTYSGIIHAFKTIYAKEGGFLGFYRGLMPTILGMAPYAGVSFFTF
GTLKSVGLSYAPALLGRPSSDNPNVLVLKTHINLLCGGVAGAIAQTISYPFDVTRRRMQLGAVLPEFEKC
LTMRETMKYVYGQHGIRRGLYRGLSLNYIRCIPSQAVAFTTYELMKQFFHLN


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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