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Report for CCDS24005.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
24005.1 Public Mus musculus 10 Arhgap45 23 108 98 CCDS HistoryNCBI Gene:70719Re-query CCDS DB by CCDS ID:24005.1Re-query CCDS DB by GeneID:70719See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 24005.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000043311.6 ENSMUSP00000041019.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000043311.6Link to Ensembl Protein Viewer:ENSMUSP00000041019.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000043311Re-query CCDS DB by Protein ID:ENSMUSP00000041019
Original member Current member NCBI NM_027521.3 NP_081797.1 Accepted alive Link to Nucleotide Sequence:NM_027521.3Link to Protein Sequence:NP_081797.1Re-query CCDS DB by Nucleotide ID:NM_027521Re-query CCDS DB by Protein ID:NP_081797Link to BLAST:NP_081797.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_081797.1 1000 Q3TBD2-2 1000 100% 0 0

Chromosomal Locations for CCDS 24005.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80019729 80019798 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80020690 80020833 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80020951 80021035 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80021122 80021194 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80021389 80021455 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80021546 80021683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80021795 80021859 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80022077 80022187 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80022275 80022355 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80024663 80024851 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80025409 80025546 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80026156 80026346 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80026433 80026557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80026657 80026734 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80026823 80026927 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80027033 80027205 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80027539 80027727 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80027821 80027958 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80028657 80028883 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80028973 80029183 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80030289 80030376 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80030732 80031048 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (3003 nt):
ATGTGTGTCTGTGGGACTCTGCATCCAGCGCTGGACCATGACCCCCTGTGCTGCCAGACTCGCGCCCGAG
ACCTTCTCGAGGCCCGCCGGCCACTGGCCCATGAGTGCCTGGGTGAAGCTCTGCGAGTCATGCGCCAGGT
CATCTCCAGATACCCACTCCTCAACACCGTGGAGACACTCACAGCCGCTGGTACACTCATTGCCAAGGTC
AAAGCCTTTCATTATGAATGCAACAATGAATCAGATAAGAGGGAATTTGAGAAGGCTCTGGAAACCATTG
CGGTGTCCTTCAGCTGCACTGTGTCCGAGTTCCTTTTGGGTGAAGTGGACAGCAGTACTCTCCTGGCGGT
GCCTCCGGGGGACCCCAGCCAGTCCATGGAGAACCTTTATGGGGCTGGCACGGAGGGGCCCCCACATAAC
GTGGAGGAATGTGAAGAAGGTTGCCTGCCCCCCGAAGAGGTGGACATGCTTCTGCAGCGATGCGAAGGGG
GTGTGGACGCTGCACTGCAGTATGCAAAAGACATGGCCAGGTACATGAAGGACCTCATCAGCTACCTGGA
GAAGAGGACCACCCTGGAGATGGAATTCGCCAAAGGTCTCCAGAAGGTTGTCCACAACTGCAGACAGAGC
GTCACACACGAGCCCCACATGCCTCTCTTGTCCATCTACTCACTGGCCCTGGAACAAGATTTGGAGTTTG
GCCACGGCATGGTGCAGGCAGCGGGCACACTGCAGACCCAGACCTTCATGCAGCCCCTGACGCTGCGGCG
GTTGGAGCATGAGAGGCGCAGGAAGGAGATCAAAGAATCTTGGCATCGAGCACAGAGGAAGCTGCAAGAG
GCAGAGGCCAACCTGCGCAAGGCCAAACAGGGCTACAAACAACGCTGTGAAGACCACGACAAGGCCCGGC
TCCAGGTGGCCAAGGCTGAGGAGGAACAACAGGGCACAGGCCCAGGCGCAGGGACTGCGGCCTCTAAGGC
CCTGGACAAGAGGCGCAGACTGGAGGAAGAGGCCAAAAACAAGGCCGAGGAGGCCATGGCCACTTACCGC
ACATGCGTGGCAGACGCAAAGACACAGAAGCAGGAGCTGGAGGACACAAAGGTGACTGCGCTGCGGCAGA
TTCAGGAGGTCATCAGGCAGAGTGATCAGACCATTAAGTCGGCCACCATCTCCTACTACCAGCTGATGCA
CATGCAGACAGCACCGCTGCCCGTGAACTTCCAGATGCTGTGCGAGAGCAGCAAACTATATGACCCGGGC
CAACAGTACGCATCTCACGTGCGTCAGCTGCAGAGAGGCGAGGAGCCGGACGTGCGCTACGACTTTGAGC
CTTATGTCTCTAACAACTCCTGGTCCCCAATCATGCGTACACGGAAGGGCAGCTTCAACCCTGGTGATGC
TTCAGGACCCGAAGCTGCTGGTAGTCCCCCCGAGGAAGGTGGCACCTCTGAGGCAGCACCCAACAAGGAC
CACAGGGGGGGACGAGGTCACCAGGTTCATAAGTCCTGGCCCATCTCCATCTCAGACACCGAAGTTGGTC
TGGACACCAGCTCAGGGGACTTGAAGAAGTTCGATCGAACATCTTCCAGTGGGACGATGTCATCCAGTGA
GGAGCTGGGGGATCAGGAAGCTGGCTTGGTAGCTTCCGCCTTTGATTCAGCTGACCTCAATGGCATGGAC
CCCGAGTTACCTGTGGCCATGCCCAGTGGACCCTTCCGCCATGTGGGATTGTCCAAGGCAGCCCGCACAC
ACCGACTTCGCAAACTGCGCACGCCAGCCAAGTGCAGAGAGTGTAACAGCTATGTGTACTTCCAAGGAGC
TGAATGTGAAGAGTGCTGTCTGGCTTGTCACAAAAAGTGTTTGGAGACCCTGGCCATCCAGTGTGGCCAC
AAGAAGCTTCAGGGCCGCCTGCAGCTCTTTGGACAAGACTTCAGCCAGGCAGCCCTCAGCACCCCTGATG
GGGTGCCCTTCATTGTCAAAAAATGTGTCTGTGAGATTGAGCGGCGGGCACTGCACACCAAGGGGATCTA
CCGGGTCAATGGCGTGAAAACGCGTGTGGAGAAGCTGTGCCAGGCTTTTGAGAATGGCAAAGAGTTGGTG
GAGTTGTCACAGGCCTCACCCCACGACATCAGCAACGTCCTAAAGCTATACCTGCGGCAGCTACCGGAGC
CCCTTATCTCTTTTCGCTTCTACCATGAGCTGGTGGGACTAGCTAAGGACAGCCTAAAGGCCGAAGCCGA
AGCTAAGGCAGCGAGCCGGGGTCGGCAGGGTGGGTCCGAGAGTGAGGCTGCAACCTTGGCTATGGTGGGC
CGCCTGCGTGAGCTCATGCAGGATCTGCCAGCCGAAAACCGGGCCACACTCTTATACCTGCTGAAGCACT
TGCGAAGGATCGTGGAAATGGAGCAGGATAACAAGATGACCCCTGGGAACCTGGGCATCGTTTTCGGGCC
CACACTGTTGCGGCCTCGACCCACTGACGCCACCGTGTCCCTCTCTTCTCTGGTGGATTATCCCCACCAG
GCCCGAGTTATTGAGACTCTGATTGTCCACTACGGCCTGGTCTTTGAGGAGGAGCCAGAGGAGGCGCCTG
GCAGCCAGGAGGGGGCATCCACCCAGTGTGGCCAGCTGGAGTCTGCTGAGGGCATTGTCTTCCCCCTGCA
GGAGGAGGCAGAGGACGGAAGCCGAGAATCTCACGCGGCATCTAATGACTCGGACTCTGAGCTGGAAGAC
GCTTCTGACCCCCTTTCATCCTCGGACGCCAGTGCTCTACACCGCCTCAGTTTCCTGGAGCAGACCGAGG
CAGGCCTGGAGGAAGGTCCCCAGAGCCATAGTGGCAGTGAGGAACAGCTGGAGGGTGAGGATGGAGCCCC
GGGTCCGTGGCTGTGTCACTTCAACACCAACCAGTCCAACAACACATCACGGGCCCCTCTGCCCACCATG
CGGCTCCGAGGAGGGCAGATCACAGGTGGCACCAGTCAGGAGCGGCAGCCACAGTTCGTCTGA

Translation (1000 aa):
MCVCGTLHPALDHDPLCCQTRARDLLEARRPLAHECLGEALRVMRQVISRYPLLNTVETLTAAGTLIAKV
KAFHYECNNESDKREFEKALETIAVSFSCTVSEFLLGEVDSSTLLAVPPGDPSQSMENLYGAGTEGPPHN
VEECEEGCLPPEEVDMLLQRCEGGVDAALQYAKDMARYMKDLISYLEKRTTLEMEFAKGLQKVVHNCRQS
VTHEPHMPLLSIYSLALEQDLEFGHGMVQAAGTLQTQTFMQPLTLRRLEHERRRKEIKESWHRAQRKLQE
AEANLRKAKQGYKQRCEDHDKARLQVAKAEEEQQGTGPGAGTAASKALDKRRRLEEEAKNKAEEAMATYR
TCVADAKTQKQELEDTKVTALRQIQEVIRQSDQTIKSATISYYQLMHMQTAPLPVNFQMLCESSKLYDPG
QQYASHVRQLQRGEEPDVRYDFEPYVSNNSWSPIMRTRKGSFNPGDASGPEAAGSPPEEGGTSEAAPNKD
HRGGRGHQVHKSWPISISDTEVGLDTSSGDLKKFDRTSSSGTMSSSEELGDQEAGLVASAFDSADLNGMD
PELPVAMPSGPFRHVGLSKAARTHRLRKLRTPAKCRECNSYVYFQGAECEECCLACHKKCLETLAIQCGH
KKLQGRLQLFGQDFSQAALSTPDGVPFIVKKCVCEIERRALHTKGIYRVNGVKTRVEKLCQAFENGKELV
ELSQASPHDISNVLKLYLRQLPEPLISFRFYHELVGLAKDSLKAEAEAKAASRGRQGGSESEAATLAMVG
RLRELMQDLPAENRATLLYLLKHLRRIVEMEQDNKMTPGNLGIVFGPTLLRPRPTDATVSLSSLVDYPHQ
ARVIETLIVHYGLVFEEEPEEAPGSQEGASTQCGQLESAEGIVFPLQEEAEDGSRESHAASNDSDSELED
ASDPLSSSDASALHRLSFLEQTEAGLEEGPQSHSGSEEQLEGEDGAPGPWLCHFNTNQSNNTSRAPLPTM
RLRGGQITGGTSQERQPQFV


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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