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Report for CCDS35976.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
35976.1 Public Mus musculus 10 Gamt 23 108 98 CCDS HistoryNCBI Gene:14431Re-query CCDS DB by CCDS ID:35976.1Re-query CCDS DB by GeneID:14431See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 35976.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000105363.7 ENSMUSP00000101002.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000105363.7Link to Ensembl Protein Viewer:ENSMUSP00000101002.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000105363Re-query CCDS DB by Protein ID:ENSMUSP00000101002
Original member Current member NCBI NM_010255.4 NP_034385.1 Accepted alive Link to Nucleotide Sequence:NM_010255.4Link to Protein Sequence:NP_034385.1Re-query CCDS DB by Nucleotide ID:NM_010255Re-query CCDS DB by Protein ID:NP_034385Link to BLAST:NP_034385.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_034385.1 236 O35969-1 236 100% 0 0

Chromosomal Locations for CCDS 35976.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80258317 80258457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80258940 80259050 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80259177 80259244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80259601 80259664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80259768 80259913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80260721 80260901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (711 nt):
ATGAGCTCTTCTGCAGCTAGCCCGCTCTTCGCGCCCGGCGAGGACTGCGGCCCCGCGTGGCGCGCGGCCC
CCGCGGCCTATGACGCGTCTGACACGCACCTGCAAATCCTGGGCAAGCCAGTGATGGAGCGTTGGGAGAC
CCCCTATATGCATGCGCTAGCGGCGGCTGCTGCCTCCAGAGGGGGCCGGGTCTTGGAAGTGGGCTTCGGT
ATGGCCATTGCAGCCTCCAGGGTGCAACAGGCCCCCATAGAGGAACACTGGATTATTGAGTGCAATGATG
GGGTCTTCCAGCGTCTACAAGACTGGGCCCTGCGGCAGCCACATAAGGTTGTTCCCTTGAAAGGCCTGTG
GGAGGAGGTGGCACCTACCCTGCCTGACGGTCACTTTGATGGGATTCTATATGACACGTACCCGCTGTCT
GAAGAGGCCTGGCACACTCACCAGTTCAACTTTATTAAGAATCATGCCTTCCGCTTGCTGAAGACCGGGG
GCGTCCTCACCTACTGCAACCTCACGTCCTGGGGGGAGCTCATGAAGTCCAAATACACAGACATCACCAC
CATGTTTGAGGAGACGCAGGTGCCTGCACTGCAGGAAGCTGGCTTCCTGAAAGAAAACATCTGCACAGAG
GTGATGGCACTGGTGCCCCCAGCCGACTGCCGCTACTATGCCTTCCCTCAGATGATCACACCCCTGGTCA
CCAAGCACTGA

Translation (236 aa):
MSSSAASPLFAPGEDCGPAWRAAPAAYDASDTHLQILGKPVMERWETPYMHALAAAAASRGGRVLEVGFG
MAIAASRVQQAPIEEHWIIECNDGVFQRLQDWALRQPHKVVPLKGLWEEVAPTLPDGHFDGILYDTYPLS
EEAWHTHQFNFIKNHAFRLLKTGGVLTYCNLTSWGELMKSKYTDITTMFEETQVPALQEAGFLKENICTE
VMALVPPADCRYYAFPQMITPLVTKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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