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Report for CCDS38324.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
38324.1 Public Mus musculus 2 Wfdc8 23 108 98 CCDS HistoryNCBI Gene:277343Re-query CCDS DB by CCDS ID:38324.1Re-query CCDS DB by GeneID:277343See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 4, NCBI annotation release 37.1, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 38324.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000109338.1 ENSMUSP00000104962.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000109338.1Link to Ensembl Protein Viewer:ENSMUSP00000104962.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000109338Re-query CCDS DB by Protein ID:ENSMUSP00000104962
Original member NCBI NM_001080550.2 NP_001074019.1 Updated not alive Link to Nucleotide Sequence:NM_001080550.2Link to Protein Sequence:NP_001074019.1Re-query CCDS DB by Nucleotide ID:NM_001080550Re-query CCDS DB by Protein ID:NP_001074019
Current member NCBI NM_001080550.3 NP_001074019.1 Accepted alive Link to Nucleotide Sequence:NM_001080550.3Link to Protein Sequence:NP_001074019.1Re-query CCDS DB by Nucleotide ID:NM_001080550Re-query CCDS DB by Protein ID:NP_001074019Link to BLAST:NP_001074019.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001074019.1 273 Q4KUS1 273 100% 0 0

Chromosomal Locations for CCDS 38324.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 164599000 164599139 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164599949 164600089 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164603153 164603320 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164605766 164605906 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164608568 164608685 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 164608782 164608895 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (822 nt):
ATGGCCAAGTGTGGGGTGCCACAGAGAGTCCCGGGTGACTGCTTCAGACCTGTCTCAACTCGCCACCCCA
GGCAGATCCCTTCTTGCTTCTCCATCTGTTTCCTCACCCATGAAGCGCAGTCCCTCCGCGCCCTTGCCCA
CTCCTGGTGGAGTGGAGCTCTGCTGCTGCTGCTGCTGTTTCTCTTCCTCTCCTTGGAGCAGACCTCAACA
TCATACAACGCCAAGATCAAACAAAAAGTGGGAGAGTGTCCTAGGCAGCGGTTGGAATGCAGAAACGAGA
GTTTGAGCTCCTGCAAAACGGACTTCAACTGTAAGGCGCATTTCAAGTGCTGCCAATTTGCCTGTGGGAG
GAAATGCATGGATCCCTATGAAGAGCCCTGCATGCTACCCTCAGACAAAGGAAACTGCCAGGACATTTTG
ACGCGCTGGTATTTTGACTCTCAGAAGCACCAGTGCAGAGCCTTTCTATACAGTGGATGCCGTGGGAATG
CGAACAACTTCCTCACCAAGACTGACTGTAGAAACGCTTGCATGTTTGTTGAGAAGAAAGGACAGTGCCC
GCTGTTCCCTTTCCAAATGCGAATGGAGTGCCCAGCCTCCTGTAAGAACGACATGGATTGCCCGGAGAAG
GAGAAATGCTGCGAGTCCAGGTGTGGCTTCATCTGTGCCCGAGTCTGGCTAGTTAAAACGGGCTTCTGCC
CGCGGAAGCCCATAGTGTGCTCTAAGATCGACAAACCCAAGTGCCTGCAGGACATTGACTGTCCCCTGGA
TGAGAAGTGCTGCACCCGCTGTGGACTGAAGTGCTTGAAACCCAGACACTGA

Translation (273 aa):
MAKCGVPQRVPGDCFRPVSTRHPRQIPSCFSICFLTHEAQSLRALAHSWWSGALLLLLLFLFLSLEQTST
SYNAKIKQKVGECPRQRLECRNESLSSCKTDFNCKAHFKCCQFACGRKCMDPYEEPCMLPSDKGNCQDIL
TRWYFDSQKHQCRAFLYSGCRGNANNFLTKTDCRNACMFVEKKGQCPLFPFQMRMECPASCKNDMDCPEK
EKCCESRCGFICARVWLVKTGFCPRKPIVCSKIDKPKCLQDIDCPLDEKCCTRCGLKCLKPRH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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