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Report for CCDS4166.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4166.1 Public Homo sapiens 5 HSPA4 24 110 108 CCDS HistoryNCBI Gene:3308Re-query CCDS DB by CCDS ID:4166.1Re-query CCDS DB by GeneID:3308See the combined annotation on chromosome 5 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4166.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000304858.7 ENSP00000302961.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000304858.7Link to Ensembl Protein Viewer:ENSP00000302961.2Re-query CCDS DB by Nucleotide ID:ENST00000304858Re-query CCDS DB by Protein ID:ENSP00000302961
Original member Current member NCBI NM_002154.4 NP_002145.3 MANE Select Accepted alive Link to Nucleotide Sequence:NM_002154.4Link to Protein Sequence:NP_002145.3Re-query CCDS DB by Nucleotide ID:NM_002154Re-query CCDS DB by Protein ID:NP_002145Link to BLAST:NP_002145.3

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_002145.3 840 P34932-1 840 100% 0 0

Chromosomal Locations for CCDS 4166.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 5 (NC_000005.10)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5See the combined annotation on chromosome 5 in Sequence Viewer

Chromosome Start Stop Links
5 133052251 133052357 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133064980 133065037 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133067417 133067557 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133070374 133070496 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133073230 133073329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133073993 133074126 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133076654 133076898 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133086782 133086858 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133088404 133088555 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133089055 133089161 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133089562 133089695 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133091193 133091374 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133092700 133092789 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133096098 133096250 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133097161 133097286 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133099545 133099652 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133101759 133101878 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133103865 133104026 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5
5 133104233 133104436 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 5Link to Ensembl Genome Browser on chromosome 5

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2523 nt):
ATGTCGGTGGTGGGCATAGACCTGGGCTTCCAGAGCTGCTACGTCGCTGTGGCCCGCGCCGGCGGCATCG
AGACTATCGCTAATGAGTATAGCGACCGCTGCACGCCGGCTTGCATTTCTTTTGGTCCTAAGAATCGTTC
AATTGGAGCAGCAGCTAAAAGCCAGGTAATTTCTAATGCAAAGAACACAGTCCAAGGATTTAAAAGATTC
CATGGCCGAGCATTCTCTGATCCATTTGTGGAGGCAGAAAAATCTAACCTTGCATATGATATTGTGCAGT
TGCCTACAGGATTAACAGGTATAAAGGTGACATATATGGAGGAAGAGCGAAATTTTACCACTGAGCAAGT
GACTGCCATGCTTTTGTCCAAACTGAAGGAGACAGCCGAAAGTGTTCTTAAGAAGCCTGTAGTTGACTGT
GTTGTTTCGGTTCCTTGTTTCTATACTGATGCAGAAAGACGATCAGTGATGGATGCAACACAGATTGCTG
GTCTTAATTGCTTGCGATTAATGAATGAAACCACTGCAGTTGCTCTTGCATATGGAATCTATAAGCAGGA
TCTTCCTGCCTTAGAAGAGAAACCAAGAAATGTAGTTTTTGTAGACATGGGCCACTCTGCTTATCAAGTT
TCTGTATGTGCATTTAATAGAGGAAAACTGAAAGTTCTGGCCACTGCATTTGACACGACATTGGGAGGTA
GAAAATTTGATGAAGTGTTAGTAAATCACTTCTGTGAAGAATTTGGGAAGAAATACAAGCTAGACATTAA
GTCCAAAATCCGTGCATTATTACGACTCTCTCAGGAGTGTGAGAAACTCAAGAAATTGATGAGTGCAAAT
GCTTCAGATCTCCCTTTGAGCATTGAATGTTTTATGAATGATGTTGATGTATCTGGAACTATGAATAGAG
GCAAATTTCTGGAGATGTGCAATGATCTCTTAGCTAGAGTGGAGCCACCACTTCGTAGTGTTTTGGAACA
AACCAAGTTAAAGAAAGAAGATATTTATGCAGTGGAGATAGTTGGTGGTGCTACACGAATCCCTGCGGTA
AAAGAGAAGATCAGCAAATTTTTCGGTAAAGAACTTAGTACAACATTAAATGCTGATGAAGCTGTCACTC
GAGGCTGTGCATTGCAGTGTGCCATCTTATCGCCTGCTTTCAAAGTCAGAGAATTTTCTATCACTGATGT
AGTACCATATCCAATATCTCTGAGATGGAATTCTCCAGCTGAAGAAGGGTCAAGTGACTGTGAAGTCTTT
TCCAAAAATCATGCTGCTCCTTTCTCTAAAGTTCTTACATTTTATAGAAAGGAACCTTTCACTCTTGAGG
CCTACTACAGCTCTCCTCAGGATTTGCCCTATCCAGATCCTGCTATAGCTCAGTTTTCAGTTCAGAAAGT
CACTCCTCAGTCTGATGGCTCCAGTTCAAAAGTGAAAGTCAAAGTTCGAGTAAATGTCCATGGCATTTTC
AGTGTGTCCAGTGCATCTTTAGTGGAGGTTCACAAGTCTGAGGAAAATGAGGAGCCAATGGAAACAGATC
AGAATGCAAAGGAGGAAGAGAAGATGCAAGTGGACCAGGAGGAACCACATGTTGAAGAGCAACAGCAGCA
GACACCAGCAGAAAATAAGGCAGAGTCTGAAGAAATGGAGACCTCTCAAGCTGGATCCAAGGATAAAAAG
ATGGACCAACCACCCCAAGCCAAGAAGGCAAAAGTGAAGACCAGTACTGTGGACCTGCCAATCGAGAATC
AGCTATTATGGCAGATAGACAGAGAGATGCTCAACTTGTACATTGAAAATGAGGGTAAGATGATCATGCA
GGATAAACTGGAGAAGGAGCGGAATGATGCTAAGAACGCAGTGGAGGAATATGTGTATGAAATGAGAGAC
AAGCTTAGTGGTGAATATGAGAAGTTTGTGAGTGAAGATGATCGTAACAGTTTTACTTTGAAACTGGAAG
ATACTGAAAATTGGTTGTATGAGGATGGAGAAGACCAGCCAAAGCAAGTTTATGTTGATAAGTTGGCTGA
ATTAAAAAATCTAGGTCAACCTATTAAGATACGTTTCCAGGAATCTGAAGAACGACCAAAATTATTTGAA
GAACTAGGGAAACAGATCCAACAGTATATGAAAATAATCAGCTCTTTCAAAAACAAGGAGGACCAGTATG
ATCATTTGGATGCTGCTGACATGACAAAGGTAGAAAAAAGCACAAATGAAGCAATGGAGTGGATGAATAA
CAAGCTAAATCTGCAGAACAAGCAGAGTTTGACCATGGATCCAGTTGTCAAGTCAAAAGAGATTGAAGCT
AAAATTAAGGAGCTGACAAGTACTTGTAGCCCTATAATTTCAAAGCCCAAACCCAAAGTGGAACCTCCAA
AAGAGGAACAAAAAAATGCAGAGCAGAATGGACCAGTGGATGGACAAGGAGACAACCCAGGCCCCCAGGC
TGCTGAGCAGGGTACAGACACAGCTGTGCCTTCGGATTCAGACAAGAAGCTTCCTGAAATGGACATTGAT
TGA

Translation (840 aa):
MSVVGIDLGFQSCYVAVARAGGIETIANEYSDRCTPACISFGPKNRSIGAAAKSQVISNAKNTVQGFKRF
HGRAFSDPFVEAEKSNLAYDIVQLPTGLTGIKVTYMEEERNFTTEQVTAMLLSKLKETAESVLKKPVVDC
VVSVPCFYTDAERRSVMDATQIAGLNCLRLMNETTAVALAYGIYKQDLPALEEKPRNVVFVDMGHSAYQV
SVCAFNRGKLKVLATAFDTTLGGRKFDEVLVNHFCEEFGKKYKLDIKSKIRALLRLSQECEKLKKLMSAN
ASDLPLSIECFMNDVDVSGTMNRGKFLEMCNDLLARVEPPLRSVLEQTKLKKEDIYAVEIVGGATRIPAV
KEKISKFFGKELSTTLNADEAVTRGCALQCAILSPAFKVREFSITDVVPYPISLRWNSPAEEGSSDCEVF
SKNHAAPFSKVLTFYRKEPFTLEAYYSSPQDLPYPDPAIAQFSVQKVTPQSDGSSSKVKVKVRVNVHGIF
SVSSASLVEVHKSEENEEPMETDQNAKEEEKMQVDQEEPHVEEQQQQTPAENKAESEEMETSQAGSKDKK
MDQPPQAKKAKVKTSTVDLPIENQLLWQIDREMLNLYIENEGKMIMQDKLEKERNDAKNAVEEYVYEMRD
KLSGEYEKFVSEDDRNSFTLKLEDTENWLYEDGEDQPKQVYVDKLAELKNLGQPIKIRFQESEERPKLFE
ELGKQIQQYMKIISSFKNKEDQYDHLDAADMTKVEKSTNEAMEWMNNKLNLQNKQSLTMDPVVKSKEIEA
KIKELTSTCSPIISKPKPKVEPPKEEQKNAEQNGPVDGQGDNPGPQAAEQGTDTAVPSDSDKKLPEMDID


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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