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Report for CCDS42874.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
42874.1 Public Homo sapiens 20 PTPRT 24 110 108 CCDS HistoryNCBI Gene:11122Re-query CCDS DB by CCDS ID:42874.1Re-query CCDS DB by GeneID:11122See the combined annotation on chromosome 20 in Sequence Viewer

Public since: CCDS release 5, NCBI annotation release 36.3, Ensembl annotation release 47

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 42874.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000373187.6 ENSP00000362283.1 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000373187.6Link to Ensembl Protein Viewer:ENSP00000362283.1Re-query CCDS DB by Nucleotide ID:ENST00000373187Re-query CCDS DB by Protein ID:ENSP00000362283
Original member Current member NCBI NM_007050.6 NP_008981.4 MANE Select Accepted alive Link to Nucleotide Sequence:NM_007050.6Link to Protein Sequence:NP_008981.4Re-query CCDS DB by Nucleotide ID:NM_007050Re-query CCDS DB by Protein ID:NP_008981Link to BLAST:NP_008981.4

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_008981.4 1441 O14522-3 1441 100% 0 0

Chromosomal Locations for CCDS 42874.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 20 (NC_000020.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20See the combined annotation on chromosome 20 in Sequence Viewer

Chromosome Start Stop Links
20 42080879 42080932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42081882 42082017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42084682 42084845 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42085728 42085853 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42098421 42098552 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42102124 42102297 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42104569 42104718 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42106786 42106921 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42110333 42110487 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42115199 42115315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42118403 42118500 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42119935 42119971 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42128754 42128830 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42141915 42142002 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42161352 42161542 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42199240 42199388 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42236229 42236258 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42248687 42248822 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42282489 42282525 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42315723 42315996 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42350628 42350730 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42352084 42352285 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42448220 42448329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42472266 42472562 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42677866 42678159 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42756462 42756636 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42771435 42771550 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42780218 42780299 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42791195 42791466 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 42885807 42885932 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20
20 43189646 43189733 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 20Link to Ensembl Genome Browser on chromosome 20

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (4326 nt):
ATGGCGAGCCTCGCCGCGCTCGCCCTCAGCCTGCTCCTGAGGCTGCAGCTGCCGCCACTGCCCGGCGCCC
GG
GCTCAGAGCGCCGCAGGTGGCTGTTCCTTTGATGAGCACTACAGCAACTGTGGTTATAGTGTGGCTCT
A
GGGACCAATGGGTTCACCTGGGAGCAGATTAACACATGGGAGAAACCAATGCTGGACCAGGCAGTGCCC
ACA
GGATCTTTCATGATGGTGAACAGCTCTGGGAGAGCCTCTGGCCAGAAGGCCCACCTTCTCCTGCCAA
CC
CTGAAGGAGAATGACACCCACTGCATCGACTTCCATTACTACTTCTCCAGCCGTGACAGGTCCAGCCC
A
GGGGCCTTGAACGTCTACGTGAAGGTGAATGGTGGCCCCCAAGGGAACCCTGTGTGGAATGTGTCCGGG
GTC
GTCACTGAGGGCTGGGTGAAGGCAGAGCTCGCCATCAGCACTTTCTGGCCACATTTCTATCAGGTGA
TA
TTTGAATCCGTCTCATTGAAGGGTCATCCTGGCTACATCGCCGTGGACGAGGTCCGGGTCCTTGCTCA
T
CCATGCAGAAAAGCACCTCATTTTCTGCGACTCCAAAACGTGGAGGTGAATGTGGGGCAGAATGCCACA
TTT
CAGTGCATTGCTGGTGGGAAGTGGTCTCAGCATGACAAGCTTTGGCTCCAGCAATGGAATGGCAGGG
AC
ACGGCCCTGATGGTCACCCGTGTGGTCAACCACAGGCGCTTCTCAGCCACAGTCAGTGTGGCAGACAC
T
GCCCAGCGGAGCGTCAGCAAGTACCGCTGTGTGATCCGCTCTGATGGTGGGTCTGGTGTGTCCAACTAC
GCG
GAGCTGATCGTGAAAGAGCCTCCCACGCCCATTGCTCCCCCAGAGCTGCTGGCTGTGGGGGCCACAT
AC
CTGTGGATCAAGCCAAATGCCAACTCCATCATCGGGGATGGCCCCATCATCCTGAAGGAAGTGGAATA
T
CGCACCACCACAGGCACGTGGGCAGAGACCCACATAGTCGACTCTCCCAACTATAAGCTGTGGCATCTG
GAC
CCCGATGTTGAGTATGAGATCCGAGTGCTCCTCACACGACCAGGTGAGGGGGGTACGGGACCGCCAG
GG
CCTCCCCTCACCACCAGGACCAAGTGTGCAGATCCGGTACATGGCCCACAGAACGTGGAAATCGTAGA
C
ATCAGAGCCCGGCAGCTGACCCTGCAGTGGGAGCCCTTCGGCTACGCGGTGACCCGCTGCCATAGCTAC
AAC
CTCACCGTGCAGTACCAGTATGTGTTCAACCAGCAGCAGTACGAGGCCGAGGAGGTCATCCAGACCT
CC
TCCCACTACACCCTGCGAGGCCTGCGCCCCTTCATGACCATCCGGCTGCGACTCTTGCTGTCTAACCC
C
GAGGGCCGAATGGAGAGCGAGGAGCTGGTGGTGCAGACTGAGGAAGACGTTCCAGGAGCTGTTCCTCTA
GAA
TCCATCCAAGGGGGGCCCTTTGAGGAGAAGATCTACATCCAGTGGAAACCTCCCAATGAGACCAATG
GG
GTCATCACGCTCTACGAGATCAACTACAAGGCTGTCGGCTCGCTGGACCCAAGTGCTGACCTCTCGAG
C
CAGAGGGGGAAAGTGTTCAAGCTCCGGAATGAAACCCACCACCTCTTTGTGGGTCTGTACCCAGGGACC
ACC
TATTCCTTCACCATCAAGGCCAGCACAGCAAAGGGCTTTGGGCCCCCTGTCACCACTCGGATTGCCA
CC
AAAATTTCAGCTCCATCCATGCCTGAGTACGACACAGACACCCCATTGAATGAGACAGACACGACCAT
C
ACAGTGATGCTGAAACCCGCTCAGTCCCGGGGAGCTCCTGTCAGTGTTTATCAGCTGGTTGTCAAGGAG
GAG
CGACTTCAGAAGTCACGGAGGGCAGCTGACATTATTGAGTGCTTTTCGGTGCCCGTGAGCTATCGGA
AT
GCCTCCAGCCTCGATTCTCTACACTACTTTGCTGCTGAGTTGAAGCCTGCCAACCTGCCTGTCACCCA
G
CCATTTACAGTGGGTGACAATAAGACATACAATGGCTACTGGAACCCTCCTCTCTCTCCCCTGAAAAGC
TAC
AGCATCTACTTCCAGGCACTCAGCAAAGCCAATGGAGAGACCAAAATCAACTGTGTTCGTCTGGCTA
CA
AAAGGTGCCTCCACCCAGAATTCTAACACTGTGGAGCCAGAGAAGCAGGTGGACAACACCGTGAAGAT
G
GCTGGCGTGATCGCTGGCCTCCTCATGTTCATCATCATTCTCCTGGGCGTGATGCTCACCATCAAAAGG
AG
A
AGAAATGCTTATTCCTACTCCTATTACTTGAAGCTGGCCAAGAAGCAGAAGGAGACCCAGAGTGGAG
CC
CAGAGGGAGATGGGGCCTGTGGCCTCTGCCGACAAACCCACCACCAAGCTCAGCGCCAGCCGCAATGA
T
GAAGGCTTCTCTTCTAGTTCTCAGGACGTCAACGGATTCACAGATGGCAGCCGCGGGGAGCTTTCCCAG
CCC
ACCCTCACGATCCAGACTCATCCCTACCGCACCTGTGACCCTGTGGAGATGAGCTACCCCCGGGACC
AG
TTCCAACCCGCCATCCGGGTGGCTGACTTGCTGCAGCACATCACGCAGATGAAGAGAGGCCAGGGCTA
C
GGGTTCAAGGAGGAATACGAGGCCTTACCAGAGGGGCAGACAGCTTCGTGGGACACAGCCAAGGAGGAT
GAA
AACCGCAATAAGAATCGATATGGGAACATCATATCCTACGACCATTCCCGGGTGAGGCTGCTGGTGC
TG
GATGGAGACCCGCACTCTGACTACATCAATGCCAACTACATTGACGGATACCATCGACCTCGGCACTA
C
ATTGCGACTCAAGGTCCGATGCAGGAGACTGTAAAGGACTTTTGGAGAATGATCTGGCAGGAGAACTCC
GCC
AGCATCGTCATGGTCACAAACCTGGTGGAAGTGGGCAGGGTGAAATGTGTGCGATACTGGCCAGATG
AC
ACGGAGGTCTACGGAGACATTAAAGTCACCCTGATTGAAACAGAGCCCCTGGCAGAATACGTCATACG
C
ACCTTCACAGTCCAGAAGAAAGGCTACCATGAGATCCGGGAGCTCCGCCTCTTCCACTTCACCAGCTGG
CCT
GACCACGGCGTTCCCTGCTATGCCACTGGCCTTCTGGGCTTCGTCCGCCAGGTCAAGTTCCTCAACC
CC
CCGGAAGCTGGGCCCATAGTGGTCCACTGCAGTGCTGGGGCTGGGCGGACTGGCTGCTTCATTGCCAT
T
GACACCATGCTTGACATGGCCGAGAATGAAGGGGTGGTGGACATCTTCAACTGCGTGCGTGAGCTCCGG
GCC
CAAAGGGTCAACCTGGTACAGACAGAGGAGCAATATGTGTTTGTGCACGATGCCATCCTGGAAGCGT
GC
CTCTGTGGCAACACTGCCATCCCTGTGTGTGAGTTCCGTTCTCTCTACTACAATATCAGCAGGCTGGA
C
CCCCAGACAAACTCCAGCCAAATCAAAGATGAATTTCAGACCCTCAACATTGTGACACCCCGTGTGCGG
CCC
GAGGACTGCAGCATTGGGCTCCTGCCCCGGAACCATGATAAGAATCGAAGTATGGACGTGCTGCCTC
TG
GACCGCTGCCTGCCCTTCCTTATCTCAGTGGACGGAGAATCCAGCAATTACATCAACGCAGCACTGAT
G
GATAGCCACAAGCAGCCTGCCGCCTTCGTGGTCACCCAGCACCCTCTACCCAACACCGTGGCAGACTTC
TGG
AGGCTGGTGTTCGATTACAACTGCTCCTCTGTGGTGATGCTGAATGAGATGGACACTGCCCAGTTCT
GT
ATGCAGTACTGGCCTGAGAAGACCTCCGGGTGCTATGGGCCCATCCAGGTGGAGTTCGTCTCCGCAGA
C
ATCGACGAGGACATCATCCACAGAATATTCCGCATCTGTAACATGGCCCGGCCACAGGATGGTTATCGT
ATA
GTCCAGCACCTCCAGTACATTGGCTGGCCTGCCTACCGGGACACGCCCCCCTCCAAGCGCTCTCTGC
TC
AAAGTGGTCCGACGACTGGAGAAGTGGCAGGAGCAGTATGACGGGAGGGAGGGACGTACTGTGGTCCA
C
TGCCTAAATGGGGGAGGCCGTAGTGGAACCTTCTGTGCCATCTGCAGTGTGTGTGAGATGATCCAGCAG
CAA
AACATCATTGACGTGTTCCACATCGTGAAAACACTGCGTAACAACAAATCCAACATGGTGGAGACCC
TG
GAACAGTATAAATTTGTATACGAGGTGGCACTGGAATATTTAAGCTCCTTTTAG


Translation (1441 aa):
MASLAALALSLLLRLQLPPLPGARAQSAAGGCSFDEHYSNCGYSVALGTNGFTWEQINTWEKPMLDQAVP
T
GSFMMVNSSGRASGQKAHLLLPTLKENDTHCIDFHYYFSSRDRSSPGALNVYVKVNGGPQGNPVWNVSG
V
VTEGWVKAELAISTFWPHFYQ
VIFESVSLKGHPGYIAVDEVRVLAHPCRKAPHFLRLQNVEVNVGQNAT
F
QCIAGGKWSQHDKLWLQ
QWNGRDTALMVTRVVNHRRFSATVSVADTAQRSVSKYRCVIRSDGGSGVSNY
A
ELIVK
EPPTPIAPPELLAVGATYLWIKPNANSIIGDGPIILKEVEYRTTTGTWAETHIVDSPNYKLWHL
D
PDVEYEIRVLLTRPGEGGTGPPGPPLTTRTKCA
DPVHGPQNVEIVDIRARQLTLQWEPFGYAVTRCHSY
N
LTVQYQYVFNQQQYEAEEVIQTSSHYTLRGLRPFMTIRLRLLLSNPEGRMESEELVVQTEED
VPGAVPL
E
SIQGGPFEEKIYIQWKPPNETNGVITLYE
INYKAVGSLDPSADLSSQRGKVFKLRNETHHLFVGLYPGT
T
YSFTIKASTAKGFGPPVTTRIATKIS
APSMPEYDTDTPLNETDTTITVMLKPAQSRGAPVSVYQLVVKE
E
RLQKSRRAADIIECFSVPVSYRNASSLDSLHYFAAELKPANLPVTQPFTVGDNKTYNGYWNPPLSPLKS
Y
SIYFQALSKANG
ETKINCVRLATKGASTQNSNTVEPEKQVDNTVKMAGVIAGLLMFIIILLGVMLTIKR
R
RNAYSYSYYLKLAKKQKETQSGAQREMGPVASADKPTTKLSASRNDEGFSSSSQDVNGFTDGSRGELSQ
P
TLTIQTHPYRTCDPVEMSYPRDQFQPAIRVADLLQHITQMKRGQGYGFKEEYE
ALPEGQTASWDTAKED
E
NRNKNRYGNIIS
YDHSRVRLLVLDGDPHSDYINANYIDGYHRPRHYIATQGPMQETVKDFWRMIWQENS
A
SIVMVTNLVEVGR
VKCVRYWPDDTEVYGDIKVTLIETEPLAEYVIRTFTVQKKGYHEIRELRLFHFTSW
P
DHGVPCYATGLLGFVRQVKFLNPPEAGPIVVHC
SAGAGRTGCFIAIDTMLDMAENEGVVDIFNCVRELR
A
QRVNLVQTE
EQYVFVHDAILEACLCGNTAIPVCEFRSLYYNISRLDPQTNSSQIKDEFQTLNIVTPRVR
P
EDCSIGLLPRNHDKNRSMDVLPLDRCLPFLISVDGESSNYINAALMD
SHKQPAAFVVTQHPLPNTVADF
W
RLVFDYNCSSVVMLNEMDTAQ
FCMQYWPEKTSGCYGPIQVEFVSADIDEDIIHRIFRICNMARPQDGYR
I
VQHLQYIGWPAYRDTPPSKRSLLKVVRRLEKWQEQYDGREGRTVVHC
LNGGGRSGTFCAICSVCEMIQQ
Q
NIIDVFHIVKTLRNNKSNMVETL
EQYKFVYEVALEYLSSF



Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser