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Report for CCDS44085.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
44085.1 Public Homo sapiens 1 HNRNPR 24 110 108 CCDS HistoryNCBI Gene:10236Re-query CCDS DB by CCDS ID:44085.1Re-query CCDS DB by GeneID:10236See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 44085.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000374616.7 ENSP00000363745.3 Accepted alive Link to Ensembl Transcript Viewer:ENST00000374616.7Link to Ensembl Protein Viewer:ENSP00000363745.3Re-query CCDS DB by Nucleotide ID:ENST00000374616Re-query CCDS DB by Protein ID:ENSP00000363745
Original member Current member NCBI NM_001102398.3 NP_001095868.1 Accepted alive Link to Nucleotide Sequence:NM_001102398.3Link to Protein Sequence:NP_001095868.1Re-query CCDS DB by Nucleotide ID:NM_001102398Re-query CCDS DB by Protein ID:NP_001095868Link to BLAST:NP_001095868.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095868.1 636 O43390-2 636 100% 0 0

Chromosomal Locations for CCDS 44085.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 23310454 23311066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23311201 23311322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23313553 23313702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23318483 23318697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23321528 23321663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23323556 23323732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23333518 23333631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23337754 23337861 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23338490 23338608 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23340852 23341008 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1911 nt):
ATGGCTAATCAGGTGAATGGTAATGCGGTACAGTTAAAAGAAGAGGAAGAACCAATGGATACTTCCAGTG
TAACTCACACAGAACACTACAAGACACTGATAGAGGCAGGCCTCCCACAGAAGGTGGCAGAAAGACTTGA
TGAAATATTTCAGACAGGATTGGTAGCTTATGTCGATCTTGATGAAAGAGCAATTGATGCTCTCAGGGAA
TTTAATGAAGAAGGAGCTCTGTCTGTACTACAGCAGTTCAAGGAAAGTGACTTATCACATGTTCAGAACA
AAAGTGCATTTTTATGTGGAGTTATGAAGACCTACAGGCAGAGAGAGAAACAGGGGAGCAAGGTGCAAGA
GTCCACAAAGGGACCTGATGAAGCGAAGATCAAGGCCTTGCTTGAGAGAACTGGTTATACTCTGGATGTA
ACCACAGGACAGAGGAAGTATGGTGGTCCTCCACCAGACAGTGTGTACTCTGGCGTGCAACCTGGAATTG
GAACGGAGGTATTTGTAGGCAAAATACCAAGGGATTTATATGAGGATGAGTTGGTGCCCCTTTTTGAGAA
GGCCGGACCCATTTGGGATCTACGTCTTATGATGGATCCACTGTCCGGTCAGAATAGAGGGTATGCATTT
ATCACCTTCTGTGGAAAGGAAGCTGCACAGGAAGCCGTGAAACTGTGTGACAGCTATGAAATTCGCCCTG
GTAAACACCTTGGAGTGTGCATTTCTGTGGCAAACAACAGACTTTTTGTTGGATCCATTCCGAAGAATAA
GACTAAAGAAAACATTTTGGAAGAATTCAGTAAAGTCACAGGTTTAACAGAGGGTTTGGTGGACGTTATT
CTCTATCATCAACCCGATGACAAAAAGAAGAATCGGGGGTTCTGCTTCCTTGAATATGAGGATCACAAGT
CAGCAGCACAAGCCAGACGCCGGCTGATGAGTGGAAAAGTAAAAGTGTGGGGAAATGTAGTTACAGTTGA
ATGGGCTGACCCTGTGGAAGAACCAGATCCAGAAGTCATGGCTAAGGTAAAAGTTTTGTTTGTGAGAAAC
TTGGCTACTACGGTGACAGAAGAAATATTGGAAAAGTCATTTTCTGAATTTGGAAAACTCGAAAGAGTAA
AGAAGTTGAAAGATTATGCATTTGTTCATTTTGAAGACAGAGGAGCAGCTGTTAAGGCTATGGATGAAAT
GAATGGCAAAGAAATAGAAGGGGAAGAAATTGAAATAGTCTTAGCCAAGCCACCAGACAAGAAAAGGAAA
GAGCGCCAAGCTGCTAGACAGGCCTCCAGAAGCACTGCGTATGAAGATTATTACTACCACCCTCCTCCTC
GCATGCCACCTCCAATTAGAGGTCGGGGTCGTGGTGGGGGGAGAGGTGGATATGGCTACCCTCCAGATTA
CTACGGCTATGAAGATTACTATGATGATTACTATGGTTATGATTATCACGACTATCGTGGAGGCTATGAA
GATCCCTACTACGGCTATGATGATGGCTATGCAGTAAGAGGAAGAGGAGGAGGAAGGGGAGGGCGAGGTG
CTCCACCACCACCAAGGGGGAGGGGAGCACCACCTCCAAGAGGTAGAGCTGGCTATTCACAGAGGGGGGC
ACCTTTGGGACCACCAAGAGGCTCTAGGGGTGGCAGAGGGGGTCCTGCTCAACAGCAGAGAGGCCGTGGT
TCCCGTGGATCTCGGGGCAATCGTGGGGGCAATGTAGGAGGCAAGAGAAAGGCAGATGGGTACAACCAGC
CTGATTCCAAGCGTCGTCAGACCAACAACCAACAGAACTGGGGTTCCCAACCCATCGCTCAGCAGCCGCT
TCAGCAAGGTGGTGACTATTCTGGTAACTATGGTTACAATAATGACAACCAGGAATTTTATCAGGATACT
TATGGGCAACAGTGGAAGTAG

Translation (636 aa):
MANQVNGNAVQLKEEEEPMDTSSVTHTEHYKTLIEAGLPQKVAERLDEIFQTGLVAYVDLDERAIDALRE
FNEEGALSVLQQFKESDLSHVQNKSAFLCGVMKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDV
TTGQRKYGGPPPDSVYSGVQPGIGTEVFVGKIPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAF
ITFCGKEAAQEAVKLCDSYEIRPGKHLGVCISVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVI
LYHQPDDKKKNRGFCFLEYEDHKSAAQARRRLMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRN
LATTVTEEILEKSFSEFGKLERVKKLKDYAFVHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRK
ERQAARQASRSTAYEDYYYHPPPRMPPPIRGRGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYE
DPYYGYDDGYAVRGRGGGRGGRGAPPPPRGRGAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRG
SRGSRGNRGGNVGGKRKADGYNQPDSKRRQTNNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDT
YGQQWK


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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