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Report for CCDS4645.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
4645.1 Public Homo sapiens 6 ZKSCAN8 24 110 108 CCDS HistoryNCBI Gene:7745Re-query CCDS DB by CCDS ID:4645.1Re-query CCDS DB by GeneID:7745See the combined annotation on chromosome 6 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 4645.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000330236.7 ENSP00000332750.5 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000330236.7Link to Ensembl Protein Viewer:ENSP00000332750.5Re-query CCDS DB by Nucleotide ID:ENST00000330236Re-query CCDS DB by Protein ID:ENSP00000332750
Original member Current member EBI ENST00000457389.6 ENSP00000402948.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000457389.6Link to Ensembl Protein Viewer:ENSP00000402948.2Re-query CCDS DB by Nucleotide ID:ENST00000457389Re-query CCDS DB by Protein ID:ENSP00000402948
Original member Current member NCBI NM_001278119.2 NP_001265048.1 Accepted alive Link to Nucleotide Sequence:NM_001278119.2Link to Protein Sequence:NP_001265048.1Re-query CCDS DB by Nucleotide ID:NM_001278119Re-query CCDS DB by Protein ID:NP_001265048Link to BLAST:NP_001265048.1
Original member Current member NCBI NM_006298.4 NP_006289.2 MANE Select Accepted alive Link to Nucleotide Sequence:NM_006298.4Link to Protein Sequence:NP_006289.2Re-query CCDS DB by Nucleotide ID:NM_006298Re-query CCDS DB by Protein ID:NP_006289Link to BLAST:NP_006289.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001265048.1 578 Q15776-1 578 100% 0 0
NP_006289.2 578 Q15776-1 578 100% 0 0

Chromosomal Locations for CCDS 4645.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 6 (NC_000006.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6See the combined annotation on chromosome 6 in Sequence Viewer

Chromosome Start Stop Links
6 28148408 28148824 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28149483 28149624 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28151845 28151936 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28152261 28152384 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6
6 28153056 28154017 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 6Link to Ensembl Genome Browser on chromosome 6

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1737 nt):
ATGGCTGAAGAATCAAGAAAGCCTTCAGCCCCATCCCCACCAGACCAGACTCCTGAAGAGGATCTTGTAA
TCGTCAAGGTAGAGGAGGATCATGGTTGGGACCAGGAATCTAGTCTGCATGAAAGTAACCCTCTTGGCCA
AGAAGTGTTCCGCCTGCGCTTCAGGCAGTTACGCTACCAGGAGACACTAGGACCCCGAGAAGCTCTGATC
CAACTACGGGCCCTTTGCCATCAGTGGCTGAGGCCAGATTTGAACACCAAGGAACAGATCCTGGAGCTGC
TGGTGCTGGAGCAGTTCTTGACCATCCTACCTGAGGAGCTCCAGACACTGGTTAAGGAACATCAGCTAGA
GAACGGAGAGGAGGTGGTGACCCTATTAGAGGATTTGGAAAGGCAGATTGATATACTAGGACGACCAGTC
TCAGCTCGCGTACATGGACATAGGGTACTCTGGGAGGAGGTAGTACATTCAGCATCTGCACCAGAGCCTC
CAAATACTCAGCTCCAATCTGAGGCAACCCAACATAAATCTCCAGTGCCCCAAGAGTCACAAGAGAGAGC
CATGTCTACTTCCCAGAGTCCTACTCGTTCCCAGAAAGGAAGTTCTGGAGACCAGGAAATGACAGCTACA
CTTCTCACAGCAGGGTTCCAGACTTTGGAGAAGATTGAAGACATGGCTGTGTCCCTTATTCGAGAGGAGT
GGCTTCTTGATCCATCACAGAAGGATCTGTGTAGAGATAACAGGCCAGAAAATTTCAGAAACATGTTCTC
CCTGGGTGGTGAGACCAGGAGTGAGAACAGGGAATTAGCTTCAAAACAGGTAATATCTACTGGAATCCAG
CCACATGGAGAGACAGCTGCCAAATGCAACGGGGATGTTATCAGGGGTCTTGAGCATGAAGAAGCCCGAG
ACCTTCTGGGCAGATTAGAGAGGCAGCGGGGAAATCCCACACAAGAGAGACGACATAAATGTGATGAATG
TGGGAAAAGCTTTGCTCAGAGCTCAGGCCTTGTTCGCCACTGGAGAATCCACACTGGGGAGAAACCCTAT
CAGTGTAATGTGTGTGGTAAAGCCTTCAGTTACAGGTCAGCCCTTCTTTCACATCAGGATATCCACAACA
AAGTAAAACGCTATCACTGTAAGGAGTGTGGCAAAGCCTTCAGTCAGAACACAGGCCTGATTCTGCACCA
GAGAATCCACACTGGGGAGAAGCCATATCAGTGCAATCAGTGTGGGAAGGCTTTCAGTCAGAGTGCGGGC
CTTATTCTGCACCAGAGAATCCACAGTGGAGAGAGACCCTATGAATGTAATGAGTGTGGGAAAGCTTTCA
GTCATAGCTCACACCTCATTGGACATCAGAGAATCCACACTGGGGAGAAGCCCTATGAGTGTGATGAGTG
TGGGAAAACCTTCAGGCGGAGCTCACATCTTATTGGTCATCAGAGGAGCCACACTGGGGAGAAACCCTAC
AAATGCAATGAGTGTGGGAGGGCCTTCAGTCAGAAGTCAGGCCTTATTGAACATCAGAGAATCCACACTG
GAGAAAGACCCTATAAATGTAAAGAATGTGGGAAAGCTTTCAATGGGAACACTGGTCTCATTCAACACCT
GAGAATTCACACAGGGGAGAAGCCCTACCAATGTAATGAGTGTGGGAAAGCCTTTATTCAGAGGTCAAGT
CTCATTCGACATCAGAGAATCCACAGTGGTGAAAAATCTGAATCCATAAGCGTTTAG

Translation (578 aa):
MAEESRKPSAPSPPDQTPEEDLVIVKVEEDHGWDQESSLHESNPLGQEVFRLRFRQLRYQETLGPREALI
QLRALCHQWLRPDLNTKEQILELLVLEQFLTILPEELQTLVKEHQLENGEEVVTLLEDLERQIDILGRPV
SARVHGHRVLWEEVVHSASAPEPPNTQLQSEATQHKSPVPQESQERAMSTSQSPTRSQKGSSGDQEMTAT
LLTAGFQTLEKIEDMAVSLIREEWLLDPSQKDLCRDNRPENFRNMFSLGGETRSENRELASKQVISTGIQ
PHGETAAKCNGDVIRGLEHEEARDLLGRLERQRGNPTQERRHKCDECGKSFAQSSGLVRHWRIHTGEKPY
QCNVCGKAFSYRSALLSHQDIHNKVKRYHCKECGKAFSQNTGLILHQRIHTGEKPYQCNQCGKAFSQSAG
LILHQRIHSGERPYECNECGKAFSHSSHLIGHQRIHTGEKPYECDECGKTFRRSSHLIGHQRSHTGEKPY
KCNECGRAFSQKSGLIEHQRIHTGERPYKCKECGKAFNGNTGLIQHLRIHTGEKPYQCNECGKAFIQRSS
LIRHQRIHSGEKSESISV


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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