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Report for CCDS46453.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
46453.1 Public Homo sapiens 2 SP9 24 110 108 CCDS HistoryNCBI Gene:100131390Re-query CCDS DB by CCDS ID:46453.1Re-query CCDS DB by GeneID:100131390See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 6, NCBI annotation release 37.1, Ensembl annotation release 55

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 46453.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000394967.3 ENSP00000378418.2 MANE Select Accepted alive Link to Ensembl Transcript Viewer:ENST00000394967.3Link to Ensembl Protein Viewer:ENSP00000378418.2Re-query CCDS DB by Nucleotide ID:ENST00000394967Re-query CCDS DB by Protein ID:ENSP00000378418
Original member Current member NCBI NM_001145250.2 NP_001138722.1 MANE Select Accepted alive Link to Nucleotide Sequence:NM_001145250.2Link to Protein Sequence:NP_001138722.1Re-query CCDS DB by Nucleotide ID:NM_001145250Re-query CCDS DB by Protein ID:NP_001138722Link to BLAST:NP_001138722.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001138722.1 484 P0CG40 484 100% 0 0

Chromosomal Locations for CCDS 46453.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '+' strand of Chromosome 2 (NC_000002.12)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 174335093 174335113 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 174336107 174337540 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1455 nt):
ATGGCCACGTCTATACTCGGGGAAGAGCCGCGCTTCGGAACGACCCCGTTGGCCATGCTGGCGGCGACCT
GCAACAAGATCGGCAACACGAGCCCGCTGACGACGCTGCCAGAGTCGAGCGCCTTCGCCAAAGGCGGCTT
TCACCCCTGGAAGCGCTCCTCGTCCAGCTGCAACCTCGGCTCCAGCCTCTCGGGCTTCGCGGTGGCCACC
GGGGGCCGTGGCTCGGGCGGCCTGGCGGGCGGCTCGGGCGCCGCCAACAGCGCCTTCTGCCTGGCCTCCA
CGTCGCCCACGTCGTCCGCCTTCAGCAGCGACTACGGCGGCCTCTTCTCCAACTCGGCGGCTGCCGCGGC
GGCAGCGGCCGGGGTGTCCCCGCAGGAGGCGGGTGGCCAGTCGGCCTTCATTTCCAAGGTGCACACGACG
GCAGCCGACGGGCTGTACCCGCGCGTGGGCATGGCGCACCCGTACGAGTCCTGGTACAAGTCGGGCTTCC
ATTCGACGCTGGCGGCCGGCGAGGTGACCAACGGCGCGGCGTCGTCGTGGTGGGACGTGCACAGCAGCCC
GGGCTCGTGGCTGGAAGTGCAGAACCCCGCTGGGGGGCTCCAGAGCTCGCTGCACTCGGGCGCCCCCCAG
GCCTCGCTGCACTCGCAGCTGGGCACCTACAACCCCGACTTCAGCTCGCTCACGCACTCCGCCTTCAGCT
CCACGGGCCTCGGCTCCTCCGCCGCCGCCGCCTCCCACCTGCTCTCCACCAGCCAGCACCTGCTGGCCCA
GGACGGCTTCAAGCCGGTGTTGCCCTCCTATTCGGACTCCAGCGCCGCCGTGGCAGCCGCCGCCGCCAGC
GCCATGATATCGGGCGCCGCGGCTGCCGCCGCCGGGGGGAGCTCGGCACGCTCTGCCCGCCGCTACTCGG
GCCGCGCCACCTGCGACTGCCCCAACTGCCAGGAGGCGGAGCGGCTGGGCCCGGCCGGGGCGAGCCTGCG
GCGCAAGGGCCTGCACAGCTGCCACATTCCGGGCTGCGGCAAGGTGTACGGGAAGACGTCGCACCTGAAG
GCGCACCTGCGCTGGCACACGGGCGAGCGGCCCTTCGTGTGCAACTGGCTCTTCTGCGGCAAGCGCTTCA
CGCGCTCGGACGAGCTGCAGCGGCATCTGCGGACTCACACGGGCGAGAAGCGCTTCGCCTGTCCGGTGTG
CAACAAGCGCTTCATGCGCAGCGACCACCTGAGCAAACACATTAAGACGCACAACGGGGGCGGCGGGGGC
AAAAAGGGCAGCGACAGTGACACGGACGCCAGCAACCTGGAGACGCCCCGTTCCGAATCCCCCGACCTCA
TCCTGCATGACTCCGGCGTCAGTGCCGCCCGGGCGGCGGCAGCGGCGGCGGCGGCAGCGGCGGCGGCGGC
GGCGGCGGCCTCCGCGGGAGGCAAGGAAGCAGCGTCTGGCCCCAACGACTCTTAG

Translation (484 aa):
MATSILGEEPRFGTTPLAMLAATCNKIGNTSPLTTLPESSAFAKGGFHPWKRSSSSCNLGSSLSGFAVAT
GGRGSGGLAGGSGAANSAFCLASTSPTSSAFSSDYGGLFSNSAAAAAAAAGVSPQEAGGQSAFISKVHTT
AADGLYPRVGMAHPYESWYKSGFHSTLAAGEVTNGAASSWWDVHSSPGSWLEVQNPAGGLQSSLHSGAPQ
ASLHSQLGTYNPDFSSLTHSAFSSTGLGSSAAAASHLLSTSQHLLAQDGFKPVLPSYSDSSAAVAAAAAS
AMISGAAAAAAGGSSARSARRYSGRATCDCPNCQEAERLGPAGASLRRKGLHSCHIPGCGKVYGKTSHLK
AHLRWHTGERPFVCNWLFCGKRFTRSDELQRHLRTHTGEKRFACPVCNKRFMRSDHLSKHIKTHNGGGGG
KKGSDSDTDASNLETPRSESPDLILHDSGVSAARAAAAAAAAAAAAAAAASAGGKEAASGPNDS


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
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 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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