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Report for CCDS60020.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
60020.1 Public Homo sapiens 1 HNRNPR 24 110 108 CCDS HistoryNCBI Gene:10236Re-query CCDS DB by CCDS ID:60020.1Re-query CCDS DB by GeneID:10236See the combined annotation on chromosome 1 in Sequence Viewer

Public since: CCDS release 14, NCBI annotation release 105, Ensembl annotation release 73

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 60020.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000478691.5 ENSP00000474437.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000478691.5Link to Ensembl Protein Viewer:ENSP00000474437.1Re-query CCDS DB by Nucleotide ID:ENST00000478691Re-query CCDS DB by Protein ID:ENSP00000474437
Original member Current member NCBI NM_001102399.3 NP_001095869.1 Accepted alive Link to Nucleotide Sequence:NM_001102399.3Link to Protein Sequence:NP_001095869.1Re-query CCDS DB by Nucleotide ID:NM_001102399Re-query CCDS DB by Protein ID:NP_001095869Link to BLAST:NP_001095869.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001095869.1 535 O43390-4 535 100% 0 0

Chromosomal Locations for CCDS 60020.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 1 (NC_000001.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1See the combined annotation on chromosome 1 in Sequence Viewer

Chromosome Start Stop Links
1 23310454 23311066 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23311201 23311322 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23313553 23313702 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23318483 23318697 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23321528 23321663 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23323556 23323732 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23333518 23333631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1
1 23337754 23337834 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 1Link to Ensembl Genome Browser on chromosome 1

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1608 nt):
ATGAAGACCTACAGGCAGAGAGAGAAACAGGGGAGCAAGGTGCAAGAGTCCACAAAGGGACCTGATGAAG
CGAAGATCAAGGCCTTGCTTGAGAGAACTGGTTATACTCTGGATGTAACCACAGGACAGAGGAAGTATGG
TGGTCCTCCACCAGACAGTGTGTACTCTGGCGTGCAACCTGGAATTGGAACGGAGGTATTTGTAGGCAAA
ATACCAAGGGATTTATATGAGGATGAGTTGGTGCCCCTTTTTGAGAAGGCCGGACCCATTTGGGATCTAC
GTCTTATGATGGATCCACTGTCCGGTCAGAATAGAGGGTATGCATTTATCACCTTCTGTGGAAAGGAAGC
TGCACAGGAAGCCGTGAAACTGTGTGACAGCTATGAAATTCGCCCTGGTAAACACCTTGGAGTGTGCATT
TCTGTGGCAAACAACAGACTTTTTGTTGGATCCATTCCGAAGAATAAGACTAAAGAAAACATTTTGGAAG
AATTCAGTAAAGTCACAGGTTTAACAGAGGGTTTGGTGGACGTTATTCTCTATCATCAACCCGATGACAA
AAAGAAGAATCGGGGGTTCTGCTTCCTTGAATATGAGGATCACAAGTCAGCAGCACAAGCCAGACGCCGG
CTGATGAGTGGAAAAGTAAAAGTGTGGGGAAATGTAGTTACAGTTGAATGGGCTGACCCTGTGGAAGAAC
CAGATCCAGAAGTCATGGCTAAGGTAAAAGTTTTGTTTGTGAGAAACTTGGCTACTACGGTGACAGAAGA
AATATTGGAAAAGTCATTTTCTGAATTTGGAAAACTCGAAAGAGTAAAGAAGTTGAAAGATTATGCATTT
GTTCATTTTGAAGACAGAGGAGCAGCTGTTAAGGCTATGGATGAAATGAATGGCAAAGAAATAGAAGGGG
AAGAAATTGAAATAGTCTTAGCCAAGCCACCAGACAAGAAAAGGAAAGAGCGCCAAGCTGCTAGACAGGC
CTCCAGAAGCACTGCGTATGAAGATTATTACTACCACCCTCCTCCTCGCATGCCACCTCCAATTAGAGGT
CGGGGTCGTGGTGGGGGGAGAGGTGGATATGGCTACCCTCCAGATTACTACGGCTATGAAGATTACTATG
ATGATTACTATGGTTATGATTATCACGACTATCGTGGAGGCTATGAAGATCCCTACTACGGCTATGATGA
TGGCTATGCAGTAAGAGGAAGAGGAGGAGGAAGGGGAGGGCGAGGTGCTCCACCACCACCAAGGGGGAGG
GGAGCACCACCTCCAAGAGGTAGAGCTGGCTATTCACAGAGGGGGGCACCTTTGGGACCACCAAGAGGCT
CTAGGGGTGGCAGAGGGGGTCCTGCTCAACAGCAGAGAGGCCGTGGTTCCCGTGGATCTCGGGGCAATCG
TGGGGGCAATGTAGGAGGCAAGAGAAAGGCAGATGGGTACAACCAGCCTGATTCCAAGCGTCGTCAGACC
AACAACCAACAGAACTGGGGTTCCCAACCCATCGCTCAGCAGCCGCTTCAGCAAGGTGGTGACTATTCTG
GTAACTATGGTTACAATAATGACAACCAGGAATTTTATCAGGATACTTATGGGCAACAGTGGAAGTAG

Translation (535 aa):
MKTYRQREKQGSKVQESTKGPDEAKIKALLERTGYTLDVTTGQRKYGGPPPDSVYSGVQPGIGTEVFVGK
IPRDLYEDELVPLFEKAGPIWDLRLMMDPLSGQNRGYAFITFCGKEAAQEAVKLCDSYEIRPGKHLGVCI
SVANNRLFVGSIPKNKTKENILEEFSKVTGLTEGLVDVILYHQPDDKKKNRGFCFLEYEDHKSAAQARRR
LMSGKVKVWGNVVTVEWADPVEEPDPEVMAKVKVLFVRNLATTVTEEILEKSFSEFGKLERVKKLKDYAF
VHFEDRGAAVKAMDEMNGKEIEGEEIEIVLAKPPDKKRKERQAARQASRSTAYEDYYYHPPPRMPPPIRG
RGRGGGRGGYGYPPDYYGYEDYYDDYYGYDYHDYRGGYEDPYYGYDDGYAVRGRGGGRGGRGAPPPPRGR
GAPPPRGRAGYSQRGAPLGPPRGSRGGRGGPAQQQRGRGSRGSRGNRGGNVGGKRKADGYNQPDSKRRQT
NNQQNWGSQPIAQQPLQQGGDYSGNYGYNNDNQEFYQDTYGQQWK


Links Key
 Links to:   History report
  BLAST report
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  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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