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Report for CCDS71154.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
71154.1 Public Mus musculus 2 Bfsp1 23 108 98 CCDS HistoryNCBI Gene:12075Re-query CCDS DB by CCDS ID:71154.1Re-query CCDS DB by GeneID:12075See the combined annotation on chromosome 2 in Sequence Viewer

Public since: CCDS release 16, NCBI annotation release 104, Ensembl annotation release 75

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 71154.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000099296.3 ENSMUSP00000096899.3 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000099296.3Link to Ensembl Protein Viewer:ENSMUSP00000096899.3Re-query CCDS DB by Nucleotide ID:ENSMUST00000099296Re-query CCDS DB by Protein ID:ENSMUSP00000096899
Original member NCBI NM_001291061.1 NP_001277990.1 Updated not alive Link to Nucleotide Sequence:NM_001291061.1Link to Protein Sequence:NP_001277990.1Re-query CCDS DB by Nucleotide ID:NM_001291061Re-query CCDS DB by Protein ID:NP_001277990
Current member NCBI NM_001291061.2 NP_001277990.1 Accepted alive Link to Nucleotide Sequence:NM_001291061.2Link to Protein Sequence:NP_001277990.1Re-query CCDS DB by Nucleotide ID:NM_001291061Re-query CCDS DB by Protein ID:NP_001277990Link to BLAST:NP_001277990.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001277990.1 669 A2AMT1-1 669 100% 0 0

Chromosomal Locations for CCDS 71154.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 2 (NC_000068.7)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2See the combined annotation on chromosome 2 in Sequence Viewer

Chromosome Start Stop Links
2 143826666 143827639 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143830084 143830169 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143831837 143832057 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143841674 143841799 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143845901 143845990 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143848928 143849023 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143858057 143858117 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2
2 143862576 143862931 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 2Link to Ensembl Genome Browser on chromosome 2

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2010 nt):
ATGTACCGCCGCAGCTACGTCTTCCAGGCCCGCCAGGAGCGCTACGAGCGCGCCCAGCCCGCGGGCCCCG
CCGCCCAGCCCGGGGGAACCGCGCCCGGCCTGGCAGCGCTGCAGGCGCTGGGCGAGCGCGTGGCAGTCCA
GGTCCAGCGGGCCCGCGCGCTCCAGCAGCGCCACGCCGGCCTGCGGCGGCAGCTCGACGCCTTCCAGCGC
CTGGGCGAGCAGCCCGGGCCCGAGGACGCGCTCGCCCGCCACGTCGAGGCCAATCTGCAGCGCGCCCGGG
ACCTGACAGCCGAGCACGCGCGGCTCGAGAGGCAGGAGGCCGAGGCGCAGCGCGCGCTCGACGAGTTCCG
CAGCAAATACGAAAATGAGTGTGAATGTCAGTTGGTGCTAAAGGAAATGCTGGAACGGCTTAACAAGGAA
GCCGATGAAGCCTTATTGCGTAACCTGCACCTTCAGTTGGAGGCACAGTTTCTGCAGGCAGATATCAGTG
TGGCCAAGGACAGGTACAAGAAGAATCTTCTGGAGATTCAGACCTACATCACCGTCCTGCAGCAGATCGT
ACAGACTGCTCCTCAAGTGTCCCTGGTTACTGGGATGAGGGAGTCTGGCCTCCTCATGCAGGAGAAGCTG
TTCACAGAACGGGAAGTGGCTGCCCTGCAGAACCAGCTGGAGGAGGGCCGAGAGGCAGTCACCCACCTGC
AGGCACAGAAAGCTGAGCTGCAGGCCCAGACCACGGCCCTGGAACAAGCTATTAAGCATGCTCATGAGTG
TTACGATGAGGAGCTACAGCTTTACAACGAGCAGATCGAAAACCTTCGGAAGGAGATCGAGGAGGCGGAG
CGGTCTCTGGAGAGGTCGTCCTATGACTGCAGGCAGCTAGCCGTGGCCCAGCAGACGCTGAGGAATGAGC
TAGACCGTTATCATCGGATCATTGAGATTGAAGGCAGCAGGCTGAGCTCTGTTTTCATTGAGACGCCCAT
CTCTCTGATCACCCCGAGCCATGGGGCCCCTCTCAGCCTTGGATCCAGTGTGAAAGATCTTGCCAGGGCC
GTGCAGGATATTACAGCAGCTAAACCGAGACAGAAGGCCCTCCCCAAGAGCCTTCCAAAAAGAAAGGAGA
TTATAGCTCAAGATAAGGTGGAGGAAACTCTGGAAGATGCACCATTAAAACCTCCGCAGGAGCCAAAGGC
ACTGCAGGTGGAACGGAAAGCAGAAGGTGGCTCTCAGCCCGGAGCAGGGGGAGGACATGGAGTAAGTCCC
ACACAAGAAGGGGGTCCTGAGGATGTGCCAGACGGGGGCCAGATAAGCAAAGCCTTTGGGAAACTGTGCA
AAGTAGTGAAAGAGAGAGTGAGCGGCCACAAAGAGCCCGAGCCTGAGCCGCCCACGGACCTTTTCACCAA
AGGACGGCATGTACTCGTCACAGGGGAGTCTAGTTTTGTTGACCCCGAGTTCTACTCCTCCTCCATCCCA
GCTAGAGGTGGGGTGGTGATTTCCATTGAGGAAGACTCTATGCATCATGACGGCCACGTAGAGCCCTCTC
CTGGACAGCCCATGCCACCTGTGGAGAATGGACAGGGCGTTCCCCAGGGCAGGGAAGGTGACCACTCAAA
CCATCAGCAGGGTACAGACAAGAATGGGTTACGGGCCAAGGAACCAAAAGACCTGGAGGAAAAAGATGAT
GATGGCAAGAAGGAAGCTGAGGGGAGCAGGAGACCCTGTCCTGTGATCATACCTGGTCCTGATGAACCAT
CTACATCCCATTCACAGACGTCTGGGTCCAATCAGGGTGGACCAGTGGGGCCTGCGAGTAAGAGCAGTAG
CCTGCTGGCAAAGGGCCCTTCGAAGGCTCTGTCTATTAAGAAGGTGGAGGTGGTGGAATCCATTGAGAAG
ATTTCAACAGAGAGTATTCAGACATATGAAGAGACTTCCGTAATTGTGGAGACTCTGATTGGGAAGTCAA
AGGGCAACAAGAAACTGGGAGAGAAGAGCTTGCCAGACACAAGGGCTTGA

Translation (669 aa):
MYRRSYVFQARQERYERAQPAGPAAQPGGTAPGLAALQALGERVAVQVQRARALQQRHAGLRRQLDAFQR
LGEQPGPEDALARHVEANLQRARDLTAEHARLERQEAEAQRALDEFRSKYENECECQLVLKEMLERLNKE
ADEALLRNLHLQLEAQFLQADISVAKDRYKKNLLEIQTYITVLQQIVQTAPQVSLVTGMRESGLLMQEKL
FTEREVAALQNQLEEGREAVTHLQAQKAELQAQTTALEQAIKHAHECYDEELQLYNEQIENLRKEIEEAE
RSLERSSYDCRQLAVAQQTLRNELDRYHRIIEIEGSRLSSVFIETPISLITPSHGAPLSLGSSVKDLARA
VQDITAAKPRQKALPKSLPKRKEIIAQDKVEETLEDAPLKPPQEPKALQVERKAEGGSQPGAGGGHGVSP
TQEGGPEDVPDGGQISKAFGKLCKVVKERVSGHKEPEPEPPTDLFTKGRHVLVTGESSFVDPEFYSSSIP
ARGGVVISIEEDSMHHDGHVEPSPGQPMPPVENGQGVPQGREGDHSNHQQGTDKNGLRAKEPKDLEEKDD
DGKKEAEGSRRPCPVIIPGPDEPSTSHSQTSGSNQGGPVGPASKSSSLLAKGPSKALSIKKVEVVESIEK
ISTESIQTYEETSVIVETLIGKSKGNKKLGEKSLPDTRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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