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Report for CCDS83728.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
83728.1 Public Mus musculus 10 Gamt 23 108 98 CCDS HistoryNCBI Gene:14431Re-query CCDS DB by CCDS ID:83728.1Re-query CCDS DB by GeneID:14431See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 21, NCBI annotation release 106, Ensembl annotation release 86

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 83728.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000020359.6 ENSMUSP00000020359.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000020359.6Link to Ensembl Protein Viewer:ENSMUSP00000020359.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000020359Re-query CCDS DB by Protein ID:ENSMUSP00000020359
Original member Current member NCBI NM_001347119.1 NP_001334048.1 Accepted alive Link to Nucleotide Sequence:NM_001347119.1Link to Protein Sequence:NP_001334048.1Re-query CCDS DB by Nucleotide ID:NM_001347119Re-query CCDS DB by Protein ID:NP_001334048Link to BLAST:NP_001334048.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001334048.1 252 O35969-2 252 100% 0 0

Chromosomal Locations for CCDS 83728.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 10 (NC_000076.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 80258317 80258457 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80258940 80259098 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80259177 80259244 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80259601 80259664 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80259768 80259913 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 80260721 80260901 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (759 nt):
ATGAGCTCTTCTGCAGCTAGCCCGCTCTTCGCGCCCGGCGAGGACTGCGGCCCCGCGTGGCGCGCGGCCC
CCGCGGCCTATGACGCGTCTGACACGCACCTGCAAATCCTGGGCAAGCCAGTGATGGAGCGTTGGGAGAC
CCCCTATATGCATGCGCTAGCGGCGGCTGCTGCCTCCAGAGGGGGCCGGGTCTTGGAAGTGGGCTTCGGT
ATGGCCATTGCAGCCTCCAGGGTGCAACAGGCCCCCATAGAGGAACACTGGATTATTGAGTGCAATGATG
GGGTCTTCCAGCGTCTACAAGACTGGGCCCTGCGGCAGCCACATAAGGTTGTTCCCTTGAAAGGCCTGTG
GGAGGAGGTGGCACCTACCCTGCCTGACGGTCACTTTGATGGGATTCTATATGACACGTACCCGCTGTCT
GAAGAGGCCTGGCACACTCACCAGTTCAACTTTATTAAGCTCTCTTCCCATGGTCCTACCCCTTCCTGTC
CACTGGCCTCTCTGCAGAATCATGCCTTCCGCTTGCTGAAGACCGGGGGCGTCCTCACCTACTGCAACCT
CACGTCCTGGGGGGAGCTCATGAAGTCCAAATACACAGACATCACCACCATGTTTGAGGAGACGCAGGTG
CCTGCACTGCAGGAAGCTGGCTTCCTGAAAGAAAACATCTGCACAGAGGTGATGGCACTGGTGCCCCCAG
CCGACTGCCGCTACTATGCCTTCCCTCAGATGATCACACCCCTGGTCACCAAGCACTGA

Translation (252 aa):
MSSSAASPLFAPGEDCGPAWRAAPAAYDASDTHLQILGKPVMERWETPYMHALAAAAASRGGRVLEVGFG
MAIAASRVQQAPIEEHWIIECNDGVFQRLQDWALRQPHKVVPLKGLWEEVAPTLPDGHFDGILYDTYPLS
EEAWHTHQFNFIKLSSHGPTPSCPLASLQNHAFRLLKTGGVLTYCNLTSWGELMKSKYTDITTMFEETQV
PALQEAGFLKENICTEVMALVPPADCRYYAFPQMITPLVTKH


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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