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Report for CCDS52318.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
52318.1 Public Mus musculus 7 Gdpd4 23 108 98 CCDS HistoryNCBI Gene:233537Re-query CCDS DB by CCDS ID:52318.1Re-query CCDS DB by GeneID:233537See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 7, NCBI annotation release 37.2, Ensembl annotation release 61

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 52318.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000041860.12 ENSMUSP00000036772.6 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000041860.12Link to Ensembl Protein Viewer:ENSMUSP00000036772.6Re-query CCDS DB by Nucleotide ID:ENSMUST00000041860Re-query CCDS DB by Protein ID:ENSMUSP00000036772
Original member Current member EBI ENSMUST00000170049.1 ENSMUSP00000131960.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000170049.1Link to Ensembl Protein Viewer:ENSMUSP00000131960.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000170049Re-query CCDS DB by Protein ID:ENSMUSP00000131960
Original member Current member NCBI NM_177696.3 NP_808364.2 Accepted alive Link to Nucleotide Sequence:NM_177696.3Link to Protein Sequence:NP_808364.2Re-query CCDS DB by Nucleotide ID:NM_177696Re-query CCDS DB by Protein ID:NP_808364Link to BLAST:NP_808364.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_808364.2 632 Q3TT99 632 100% 0 0

Chromosomal Locations for CCDS 52318.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '+' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 97957821 97958003 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97961558 97961661 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97966257 97966350 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97969194 97969253 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97971923 97972021 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97972092 97972185 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97972950 97973027 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97973896 97974041 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97974381 97974463 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97982823 97982973 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 97998240 97998461 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98000128 98000282 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98004251 98004398 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98006233 98006315 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98014898 98014947 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98040853 98040963 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 98048574 98048611 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1899 nt):
ATGGAAGAGACCCAAGATTCGTCTAGTAGCAAGCCAAAAAATACAGATGAGAATTTCAGTCTGTGGATAG
AACAGTACTTCAACCACAAATGCTGCATCACCTTCCTGACTGGCTGCTACAGTTGCCAATGGCAATACAG
AGAGTGGGAAAAAACTGAACTTGGATCCTGTTGCTGCTCCCGGAAAGAGCAATTTTTTTATATGTGCCTG
GTAATAGCATTCATCTTGTCTGTGCTTTTTCTGTTCGTCTGGGTAGAAACCTCCAATGAATACAACGGCT
TTGACTGGGTTGTTTATCTGGGGACAGGATGCTGGTTCTTTTGGTCCATTTTGGTGCTGAGTGCAGCTGG
GATCATGGTTGCCTACACTACCTTGCTTTTGTTGCTTGGGTTTCTGTTGCTCTGGGAAAGGATTGAACTA
AACTTGCACACTTCTCATAAGGTCTTCATTTGCCTAGTCATTGTCCTGTGCTCCTTCTTACTTGCTGTTT
TAAGCCATTTCTGGAAGGACAAGTGGCTGATAGCTGGACTGTCACTGCAGATCTTTGCTCCCTTCGTGCA
CCTGAGCCTTATAACTGTGATGATTATAATTTCCTGGCCTCTATCCATCTGTGTGGCCCGCTTGGAATCA
GAAGTTAAAGTAAGAAGATACAGGATGGCAGATTACGAGCAAGAAATACAGGAGAGGTGTAATGTATTCC
AAAGGTTAAGAGCTCTACAAATAGCTGCTGGACTGTCCTTCCTGATCATTCTTTTATGCCTTTATTTGAT
GCCACTGGGGATTTATTCTCCCTGTATTCTGAAGAAGGAGAATTTAGGGCCTAAGCCCACCCTCTTTGGA
CATAGAGGTGCACCCATGTTGGCGCCAGAGAATACCATGATGTCCTTTGAGAAGGCTGTTGAATTAGATG
TTTCTGGCCTGGAGACAGATATATACTTAAGTTTTGATAGTGTGCCTTTCCTCATGCATGACTATGACCT
GACTAGAACAACTAACATCAAAGAGGTTCTACCATCAGCGGCTGGAAACCACACTTCCAACTTCAACTGG
ACTTTCCTGTCAACTCTGAATGCCGGCAAATGGTTCTTAAAGCATAAGCCATTTTTTGGCATGAAACCTC
TATCAGAGGCTGACAAAAGAAGAGCAGGCAACCAGTCAATCCCACAGCTGTCTGAGTTATTGGCACTTGC
AAAACGGGAACAGAAGATTGTGATATTTGATCTGTTCGGCCCTCGACCAGGACATCCTCTCAGAAACACT
TTTGTCCGAAGGGTGGTAAAGGTCATCCTTGACTCTAAGATCGAGCAGCGTCTGATATTTTGGTTGCCGG
GTTTTGATAGAGACTATGTCAGGTTCATGGCTCCTGGTTTTCAGCACGTGGGCCGTTTATGGTCCATTAA
AGACCTTACAAAACATAATATTACTATAATAAATGTTGACTATAAGAGATTGTTCTACGCTGGGTTAAGA
GATTATAAGGAAGCTAAAATCTACATCCATGTGTATGTTATCAATGAGCCTTGGCTCTTCTCACTGGCCT
GGTGTTCTAGTATCAACTCTGTGACCACAGACAACATTGAGCTCCTAAATCAGCTCAGTCGCCCTCTCTT
CTTCATGACACCAGGATTCTACATGTTCATGTGGCTTTTCTTGGATATTGCTTCTGCGGTTATCATTGGT
TTTGTCTTTTGCTATAACTGGATAAAAGAGATTAAAAGAGAAAGGTGGCTTGAAGCTGCTGCATCTTCAG
GTTTACTGCATTCAGAGACTATAACAGATATAACAGAAAATAACGATGCCTCTCAACAGAAGCCAGAGGT
GGCCCCTACGTCTGCCAACTTAGCCCCTGAAAATATGATAGAACTTCAGAAAACAGAGCCTAAAACAGAA
AACTTATAG

Translation (632 aa):
MEETQDSSSSKPKNTDENFSLWIEQYFNHKCCITFLTGCYSCQWQYREWEKTELGSCCCSRKEQFFYMCL
VIAFILSVLFLFVWVETSNEYNGFDWVVYLGTGCWFFWSILVLSAAGIMVAYTTLLLLLGFLLLWERIEL
NLHTSHKVFICLVIVLCSFLLAVLSHFWKDKWLIAGLSLQIFAPFVHLSLITVMIIISWPLSICVARLES
EVKVRRYRMADYEQEIQERCNVFQRLRALQIAAGLSFLIILLCLYLMPLGIYSPCILKKENLGPKPTLFG
HRGAPMLAPENTMMSFEKAVELDVSGLETDIYLSFDSVPFLMHDYDLTRTTNIKEVLPSAAGNHTSNFNW
TFLSTLNAGKWFLKHKPFFGMKPLSEADKRRAGNQSIPQLSELLALAKREQKIVIFDLFGPRPGHPLRNT
FVRRVVKVILDSKIEQRLIFWLPGFDRDYVRFMAPGFQHVGRLWSIKDLTKHNITIINVDYKRLFYAGLR
DYKEAKIYIHVYVINEPWLFSLAWCSSINSVTTDNIELLNQLSRPLFFMTPGFYMFMWLFLDIASAVIIG
FVFCYNWIKEIKRERWLEAAASSGLLHSETITDITENNDASQQKPEVAPTSANLAPENMIELQKTEPKTE
NL


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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