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Report for CCDS7643.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
7643.1 Public Homo sapiens 10 CTBP2 24 110 108 CCDS HistoryNCBI Gene:1488Re-query CCDS DB by CCDS ID:7643.1Re-query CCDS DB by GeneID:1488See the combined annotation on chromosome 10 in Sequence Viewer

Public since: CCDS release 1, NCBI annotation release 35.1, Ensembl annotation release 23

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 7643.1

Original Current Source Nucleotide ID Protein ID MANE Status in CCDS Seq. Status Links
Original member Current member EBI ENST00000337195.10 ENSP00000338615.5 Accepted alive Link to Ensembl Transcript Viewer:ENST00000337195.10Link to Ensembl Protein Viewer:ENSP00000338615.5Re-query CCDS DB by Nucleotide ID:ENST00000337195Re-query CCDS DB by Protein ID:ENSP00000338615
Original member Current member EBI ENST00000411419.7 ENSP00000410474.2 Accepted alive Link to Ensembl Transcript Viewer:ENST00000411419.7Link to Ensembl Protein Viewer:ENSP00000410474.2Re-query CCDS DB by Nucleotide ID:ENST00000411419Re-query CCDS DB by Protein ID:ENSP00000410474
Original member Current member EBI ENST00000531469.5 ENSP00000434630.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000531469.5Link to Ensembl Protein Viewer:ENSP00000434630.1Re-query CCDS DB by Nucleotide ID:ENST00000531469Re-query CCDS DB by Protein ID:ENSP00000434630
Original member Current member EBI ENST00000494626.6 ENSP00000436285.1 Accepted alive Link to Ensembl Transcript Viewer:ENST00000494626.6Link to Ensembl Protein Viewer:ENSP00000436285.1Re-query CCDS DB by Nucleotide ID:ENST00000494626Re-query CCDS DB by Protein ID:ENSP00000436285
Original member Current member NCBI NM_001083914.3 NP_001077383.1 Accepted alive Link to Nucleotide Sequence:NM_001083914.3Link to Protein Sequence:NP_001077383.1Re-query CCDS DB by Nucleotide ID:NM_001083914Re-query CCDS DB by Protein ID:NP_001077383Link to BLAST:NP_001077383.1
Original member Current member NCBI NM_001290214.3 NP_001277143.1 Accepted alive Link to Nucleotide Sequence:NM_001290214.3Link to Protein Sequence:NP_001277143.1Re-query CCDS DB by Nucleotide ID:NM_001290214Re-query CCDS DB by Protein ID:NP_001277143Link to BLAST:NP_001277143.1
Original member Current member NCBI NM_001290215.3 NP_001277144.1 Accepted alive Link to Nucleotide Sequence:NM_001290215.3Link to Protein Sequence:NP_001277144.1Re-query CCDS DB by Nucleotide ID:NM_001290215Re-query CCDS DB by Protein ID:NP_001277144Link to BLAST:NP_001277144.1
Original member Current member NCBI NM_001321012.2 NP_001307941.1 Accepted alive Link to Nucleotide Sequence:NM_001321012.2Link to Protein Sequence:NP_001307941.1Re-query CCDS DB by Nucleotide ID:NM_001321012Re-query CCDS DB by Protein ID:NP_001307941Link to BLAST:NP_001307941.1
Original member Current member NCBI NM_001321013.2 NP_001307942.1 Accepted alive Link to Nucleotide Sequence:NM_001321013.2Link to Protein Sequence:NP_001307942.1Re-query CCDS DB by Nucleotide ID:NM_001321013Re-query CCDS DB by Protein ID:NP_001307942Link to BLAST:NP_001307942.1
Original member Current member NCBI NM_001321014.2 NP_001307943.1 Accepted alive Link to Nucleotide Sequence:NM_001321014.2Link to Protein Sequence:NP_001307943.1Re-query CCDS DB by Nucleotide ID:NM_001321014Re-query CCDS DB by Protein ID:NP_001307943Link to BLAST:NP_001307943.1
Original member Current member NCBI NM_001329.4 NP_001320.1 Accepted alive Link to Nucleotide Sequence:NM_001329.4Link to Protein Sequence:NP_001320.1Re-query CCDS DB by Nucleotide ID:NM_001329Re-query CCDS DB by Protein ID:NP_001320Link to BLAST:NP_001320.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_001077383.1 445 P56545-1 445 100% 0 0
NP_001277143.1 445 P56545-1 445 100% 0 0
NP_001277144.1 445 P56545-1 445 100% 0 0
NP_001307941.1 445 P56545-1 445 100% 0 0
NP_001307942.1 445 P56545-1 445 100% 0 0
NP_001307943.1 445 P56545-1 445 100% 0 0
NP_001320.1 445 P56545-1 445 100% 0 0

Chromosomal Locations for CCDS 7643.1

Assembly GRCh38.p14 (GCF_000001405.40)

On '-' strand of Chromosome 10 (NC_000010.11)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10See the combined annotation on chromosome 10 in Sequence Viewer

Chromosome Start Stop Links
10 124989518 124989698 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 124992695 124992812 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 124993202 124993329 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 124993855 124993985 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 124994469 124994683 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 124997964 124998170 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125002960 125003104 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125003338 125003492 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10
10 125038997 125039054 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 10Link to Ensembl Genome Browser on chromosome 10

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (1338 nt):
ATGGCCCTTGTGGATAAGCACAAAGTCAAGAGACAGCGATTGGACAGAATTTGTGAAGGTATCCGCCCCC
AGATCATGAACGGCCCCCTGCACCCCCGCCCCCTGGTGGCGCTGCTGGACGGCCGCGACTGCACTGTGGA
GATGCCCATCCTGAAGGACCTGGCCACTGTGGCCTTCTGTGACGCGCAGTCGACGCAGGAAATCCACGAG
AAGGTTCTAAACGAAGCCGTGGGCGCCATGATGTACCACACCATCACCCTCACCAGGGAGGACCTGGAGA
AGTTCAAGGCCCTGAGAGTGATCGTGCGGATAGGCAGTGGCTATGACAACGTGGACATCAAGGCTGCCGG
CGAGCTCGGAATTGCCGTGTGCAACATCCCGTCTGCAGCCGTGGAAGAGACAGCGGACTCTACCATCTGC
CACATCCTCAACCTGTACCGGAGGAACACGTGGCTGTACCAGGCACTGCGGGAAGGCACGCGGGTTCAGA
GCGTGGAGCAGATCCGCGAGGTGGCCTCGGGAGCGGCCCGCATCCGTGGGGAGACGCTGGGCCTCATTGG
CTTTGGTCGCACGGGGCAGGCGGTTGCAGTTCGAGCCAAGGCCTTTGGATTCAGCGTCATATTTTATGAC
CCCTACTTGCAGGATGGGATCGAGCGGTCCCTGGGCGTGCAGAGGGTCTACACCCTGCAGGATTTGCTGT
ATCAGAGCGACTGCGTCTCCTTGCACTGCAATCTCAACGAACATAACCACCACCTCATCAATGACTTTAC
CATAAAGCAGATGAGGCAGGGAGCATTCCTTGTGAACGCAGCCCGTGGCGGCCTGGTGGACGAGAAAGCC
TTAGCACAAGCCCTCAAGGAGGGCAGGATACGAGGGGCAGCCCTCGACGTGCATGAGTCAGAGCCCTTCA
GCTTTGCTCAGGGTCCGTTGAAAGATGCCCCGAATCTCATCTGCACTCCTCACACTGCCTGGTACAGTGA
GCAGGCGTCACTGGAGATGAGGGAGGCAGCTGCCACCGAGATCCGCCGAGCCATCACAGGTCGCATCCCA
GAAAGCTTAAGAAATTGTGTGAACAAGGAATTCTTTGTCACATCAGCGCCTTGGTCAGTAATAGACCAGC
AAGCAATTCATCCTGAGCTCAATGGTGCCACATACAGATATCCGCCAGGCATCGTGGGTGTGGCTCCAGG
AGGACTTCCTGCAGCCATGGAAGGGATCATCCCTGGAGGCATCCCAGTGACTCACAACCTCCCGACAGTG
GCACATCCTTCCCAAGCGCCCTCTCCCAACCAGCCCACAAAACACGGGGACAATCGAGAGCACCCCAACG
AGCAATAG

Translation (445 aa):
MALVDKHKVKRQRLDRICEGIRPQIMNGPLHPRPLVALLDGRDCTVEMPILKDLATVAFCDAQSTQEIHE
KVLNEAVGAMMYHTITLTREDLEKFKALRVIVRIGSGYDNVDIKAAGELGIAVCNIPSAAVEETADSTIC
HILNLYRRNTWLYQALREGTRVQSVEQIREVASGAARIRGETLGLIGFGRTGQAVAVRAKAFGFSVIFYD
PYLQDGIERSLGVQRVYTLQDLLYQSDCVSLHCNLNEHNHHLINDFTIKQMRQGAFLVNAARGGLVDEKA
LAQALKEGRIRGAALDVHESEPFSFAQGPLKDAPNLICTPHTAWYSEQASLEMREAAATEIRRAITGRIP
ESLRNCVNKEFFVTSAPWSVIDQQAIHPELNGATYRYPPGIVGVAPGGLPAAMEGIIPGGIPVTHNLPTV
AHPSQAPSPNQPTKHGDNREHPNEQ


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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