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Report for CCDS21044.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21044.1 Public Mus musculus 7 Samd4b 23 108 98 CCDS HistoryNCBI Gene:233033Re-query CCDS DB by CCDS ID:21044.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Reviewed (by RefSeq and Havana)

Sequence IDs included in CCDS 21044.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000040531.8 ENSMUSP00000040486.8 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000040531.8Link to Ensembl Protein Viewer:ENSMUSP00000040486.8Re-query CCDS DB by Nucleotide ID:ENSMUST00000040531Re-query CCDS DB by Protein ID:ENSMUSP00000040486
Original member Current member EBI ENSMUST00000208199.1 ENSMUSP00000147037.1 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000208199.1Link to Ensembl Protein Viewer:ENSMUSP00000147037.1Re-query CCDS DB by Nucleotide ID:ENSMUST00000208199Re-query CCDS DB by Protein ID:ENSMUSP00000147037
Original member Current member NCBI NM_175021.3 NP_778186.2 Accepted alive Link to Nucleotide Sequence:NM_175021.3Link to Protein Sequence:NP_778186.2Re-query CCDS DB by Nucleotide ID:NM_175021Re-query CCDS DB by Protein ID:NP_778186Link to BLAST:NP_778186.2

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_778186.2 687 Q80XS6 687 99.8544% 0 1

Chromosomal Locations for CCDS 21044.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 28401589 28401617 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28401824 28401907 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28403620 28403743 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28403864 28404062 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28405489 28405607 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28405954 28406039 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28406369 28406687 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28407231 28407317 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28407469 28407578 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28407936 28408175 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28413872 28414342 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 28423436 28423631 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (2064 nt):
ATGATGTTCCGAGACCAAGTGGGCATCCTCGCTAGCTGGTTCAAGGGCTGGAATGAGTGTGAACAGACAG
TGGCCCTGCTGTCCCTTCTGAAGCGGGTCACCCGTACCCAAGCCCGCTTTCTGCAGCTCTGCCTGGAGCA
CTCGCTGGCGGACTGCAATGATATCCACCTGCTGGAGTCAGAGGCCAACAGTGCTGCCATCGTCAGCCAG
TGGCAACAGGAGTCCAAAGAGAAGGTGGTGTCCCTCCTGCTGTCCCATCTGCCCCTGCTCCAGCCAGGCA
ACACGGAGGCCAAGTCCGAGTACATGAGACTGCTGCAGAAAGTGCTGGCCTACTCCATCGAGAGCAATGC
CTTCATTGAGGAGAGCCGCCAACTCCTCTCCTATGCCCTCATCCACCCAGCCACCACACTGGAGGACCGC
AATGCGCTAGCCCTCTGGCTGAGCCACCTGGAAGAGCGGCTAGCTAGTGGTTTCCGCACCCGGCCAGAGC
CCTCCTACCATTCACGCCAGGGCTCAGATGAATGGGGTGGACCTGCAGAGCTGGCCCCTGGAGAGGCAGG
GCCAGGCTGGCAGGACAAGCCACCCAGGGAAAATGGACACGTACCCTTCCACCCATCCAGCTCTGTGCCG
CCGGCCATCAACAGTATTGGGAGCAATGCAAACACAGGTCTCCCCTGCCAAATCCACCCTAGCCCACTGA
AGCGCTCCATGTCACTCATCCCTACGAGCCCACAGGCCCCTGGTGAGTGGCCGAGTCCAGAGGAGCTTGG
GGCCCGGGCTGCTTTCACCACGCCCGACCACGCACCCCTCTCGCCACAGAGCAGTGTGGCCTCCTCTGGC
AGTGAGCAGACGGAGGAGCAGGGCTCCAGCCGGAACACTTTCCAGGAGGATGGCAGCGGGATGAAAGATG
TGCCCTCATGGCTCAAGAGCCTCCGCTTGCACAAGTATGCTGCTCTGTTCTCACAGATGAGCTACGAAGA
GATGATGACCCTCACTGAGCAGCACCTAGAGTCGCAGAATGTCACCAAAGGTGCCCGGCACAAGATAGCC
CTGAGCATCCAAAAGCTGCGGGAGAGACAGAGCGTCCTCAAGTCCCTAGAGAAGGATGTGCTGGAAGGTG
GCAATCTGCGGAATGCTCTGCAGGAACTGCAGCAGATCATCATCACTCCTATCAAGGCCTACAGTGTCCT
TCAGGCCACCCCTACTGCCAAGGATGAGGGTCGGGGGGAGCCGCTGCTGCCAGGTGCTGAGCCTCCCCTC
ACCCACCCTGGATCAGACAAGGGCACTGAGGCCAAGGACCCTCCAGCTGCAGAGAACTATCCTCCTCCAC
CAGCTCCAGCCCCCTCTGATAGCAGTGAGCCAGCCCCAGCTCCCGTCGCCGACGGAGACATCCCCAGCCA
GTTTACACGGGTGATGGGCAAAGTATGCACCCAGCTGCTGGTGTCCCGACCAGACGAGGAGAACATCACC
AGTTACCTCCAGCTCATCGAAAAGTGCCTGACTCATGAGGCTTTCACAGAGACACAGAAGAAGCGGTTGC
TGTCCTGGAAGCAGCAAGTGCTGAAACTCCTCCGGACATTCCCTCGAAAAGCTGCACTGGACATGCAGAG
CTACCGGCAGCAGAAGGGCTGGGCATTTGGCTCCAACTCGCTCCCCATAGCTGGCTCTGTGGGGATGGGT
GTTGCCCGGCGGACCCAGCGGCAGTTCCCAATGCCTCCTCGGGCATTACCACCTGGCAGGATGGGCCTCC
TGAGCCCTTCAGGCATTGGGGGTGTCTCTCCTCGACATGCCCTTACCAGCCCCAGTCTTGGGGGTCAGGG
CCGACAGAACCTGTGGTTTGCCAATCCTGGAGGCAGCAACAGCATGCCCAGCCAGAGCCGCAGCTCTGTG
CAGCGCACTCACTCGCTCCCAGTTCACTCGTCACCCCAGGCTATTCTCATGTTCCCTCCAGACTGCCCGG
TACCTGGGCCTGACCTGGAGATCAATCCTACCCTGGAGTCTCTGTGTCTGAGCATGACAGAACACGCCTT
GGGTGATGGGACAGACAAAACCTCCACCATCTGA

Translation (687 aa):
MMFRDQVGILASWFKGWNECEQTVALLSLLKRVTRTQARFLQLCLEHSLADCNDIHLLESEANSAAIVSQ
WQQESKEKVVSLLLSHLPLLQPGNTEAKSEYMRLLQKVLAYSIESNAFIEESRQLLSYALIHPATTLEDR
NALALWLSHLEERLASGFRTRPEPSYHSRQGSDEWGGPAELAPGEAGPGWQDKPPRENGHVPFHPSSSVP
PAINSIGSNANTGLPCQIHPSPLKRSMSLIPTSPQAPGEWPSPEELGARAAFTTPDHAPLSPQSSVASSG
SEQTEEQGSSRNTFQEDGSGMKDVPSWLKSLRLHKYAALFSQMSYEEMMTLTEQHLESQNVTKGARHKIA
LSIQKLRERQSVLKSLEKDVLEGGNLRNALQELQQIIITPIKAYSVLQATPTAKDEGRGEPLLPGAEPPL
THPGSDKGTEAKDPPAAENYPPPPAPAPSDSSEPAPAPVADGDIPSQFTRVMGKVCTQLLVSRPDEENIT
SYLQLIEKCLTHEAFTETQKKRLLSWKQQVLKLLRTFPRKAALDMQSYRQQKGWAFGSNSLPIAGSVGMG
VARRTQRQFPMPPRALPPGRMGLLSPSGIGGVSPRHALTSPSLGGQGRQNLWFANPGGSNSMPSQSRSSV
QRTHSLPVHSSPQAILMFPPDCPVPGPDLEINPTLESLCLSMTEHALGDGTDKTSTI


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
  Protein ID
 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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