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Report for CCDS21801.1 (current version)

CCDS Status Species Chrom. Gene CCDS Release NCBI Annotation Release Ensembl Annotation Release Links
21801.1 Public Mus musculus 7 Igsf6 23 108 98 CCDS HistoryNCBI Gene:80719Re-query CCDS DB by CCDS ID:21801.1See the combined annotation on chromosome 7 in Sequence Viewer

Public since: CCDS release 2, NCBI annotation release 36.1, Ensembl annotation release 39

Review status: Provisional (this record has not been manually reviewed by the collaboration)

Sequence IDs included in CCDS 21801.1

Original Current Source Nucleotide ID Protein ID Status in CCDS Seq. Status Links
Original member Current member EBI ENSMUST00000047194.3 ENSMUSP00000039059.2 Accepted alive Link to Ensembl Transcript Viewer:ENSMUST00000047194.3Link to Ensembl Protein Viewer:ENSMUSP00000039059.2Re-query CCDS DB by Nucleotide ID:ENSMUST00000047194Re-query CCDS DB by Protein ID:ENSMUSP00000039059
Original member Current member NCBI NM_030691.1 NP_109616.1 Accepted alive Link to Nucleotide Sequence:NM_030691.1Link to Protein Sequence:NP_109616.1Re-query CCDS DB by Nucleotide ID:NM_030691Re-query CCDS DB by Protein ID:NP_109616Link to BLAST:NP_109616.1

RefSeq Length Related UniProtKB/SwissProt Length Identity Gaps Mismatches
NP_109616.1 237 P0C6B7 237 100% 0 0

Chromosomal Locations for CCDS 21801.1

Assembly GRCm38.p6 (GCF_000001635.26)

On '-' strand of Chromosome 7 (NC_000073.6)
Genome Browser links: Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7See the combined annotation on chromosome 7 in Sequence Viewer

Chromosome Start Stop Links
7 121065461 121065517 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121067199 121067276 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121067581 121067628 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121068261 121068364 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121070491 121070850 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7
7 121074439 121074505 Link to NCBI NucleotideLink to UCSC Genome Browser on chromosome 7Link to Ensembl Genome Browser on chromosome 7

CCDS Sequence Data
Blue highlighting indicates alternating exons.
Red highlighting indicates amino acids encoded across a splice junction.
 
Mouse over the nucleotide or protein sequence below and click on the highlighted codon or residue to select the pair.

Nucleotide Sequence (714 nt):
ATGGGCCCCGTGAGTGCACGCAGGAGCCGCCTCCGGCCAGAGATCAGCCTGATCCTTTTCCAAGTCGGTA
TGGTGGGTGCCTGCACTGTGTATGTGCTGCAACCAGGTTACCTAGAAGTGGACTACGGTTCTGACGCCGT
CACCATGGAGTGTAACTTTTCTACAGTTGGATGCCCTCCAGTGCCACCAAAGAGCTTGTGGTTTCGCTGT
GGTACTCACCAGCCTGAAGCTCTGTGCTTGGATGGATGCAGAAATGAGGCAGACAAGTTCACAGTGAAAG
AAACCCTGGACCCGGACCAAGTCTTCCTCACTGTTAACAGGCTGTCTCCAAATGACAGTGCAATTTACAT
CTGTGGAATAGCATTTCCCAATGAACTGTCACCAAGCGCTAAACACGTTGGAAAGGGGACTACACTGGTG
GTAAGAGAAAGACTTTTCAGCAAGGAGGTGCGCAGTTTCCTGATAGTGCTCTTAGCTCTGCTCTCTGTCT
ACATCACCGGTGTGTGTGTGACCTTCATAGTCCTCTTCAAATCAAAATCTAACGGTCCAAGAAGCAGAGA
AACCAAAGGCTCAAAAAAGAAGAGTGCTCGGCGTATCTTTCAGGAAATTGCTCAAGAATTATACCATAAG
AGATATGTGGAAACAAGTCATCTACCTGAGCAAGAGGGCACTGATGAAAACAGAAAAGCACTCCCCAACC
CTGGAAGAGCATAG

Translation (237 aa):
MGPVSARRSRLRPEISLILFQVGMVGACTVYVLQPGYLEVDYGSDAVTMECNFSTVGCPPVPPKSLWFRC
GTHQPEALCLDGCRNEADKFTVKETLDPDQVFLTVNRLSPNDSAIYICGIAFPNELSPSAKHVGKGTTLV
VRERLFSKEVRSFLIVLLALLSVYITGVCVTFIVLFKSKSNGPRSRETKGSKKKSARRIFQEIAQELYHK
RYVETSHLPEQEGTDENRKALPNPGRA


Links Key
 Links to:   History report
  BLAST report
  Entrez Gene
  Nucleotide report
  Protein report
 Re-query CCDS DB by:   CCDS ID
  Gene ID
  Nucleotide ID
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 Genome Browser Links:   Ensembl Genome Browser
  NCBI Sequence Viewer
  UCSC Genome Browser
  VEGA Genome Browser

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