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Conserved domains on  [gi|613410247|ref|NP_001278412|]
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midkine isoform c precursor [Mus musculus]

Protein Classification

Graphical summary

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List of domain hits

 Name Accession Description Interval E-value
PTN_MK_N super family cl02505
PTN/MK heparin-binding protein family, N-terminal domain;
34-79 3.55e-23

PTN/MK heparin-binding protein family, N-terminal domain;


The actual alignment was detected with superfamily member smart00193:

Pssm-ID: 470593  Cd Length: 80  Bit Score: 84.16  E-value: 3.55e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 613410247   34 CSEWTWGPCTPSSKDCGMGFREGTCGAQTQRVHCKVPCNWKKEFGA 79
Cdd:smart00193  1 CGEWQWGPCIPNSKDCGLGTREGTCGQETRKLKCKIPCNWKKQFGA 46
 
Name Accession Description Interval E-value
PTN smart00193
Pleiotrophin / midkine family; Heparin-binding domain family.
 34-79 3.55e-23

Pleiotrophin / midkine family; Heparin-binding domain family.


Pssm-ID: 128490  Cd Length: 80  Bit Score: 84.16  E-value: 3.55e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 613410247   34 CSEWTWGPCTPSSKDCGMGFREGTCGAQTQRVHCKVPCNWKKEFGA 79
Cdd:smart00193  1 CGEWQWGPCIPNSKDCGLGTREGTCGQETRKLKCKIPCNWKKQFGA 46
PTN_MK_N pfam05196
PTN/MK heparin-binding protein family, N-terminal domain;
31-77 4.85e-21

PTN/MK heparin-binding protein family, N-terminal domain;


Pssm-ID: 461582  Cd Length: 57  Bit Score: 77.88  E-value: 4.85e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 613410247  31 GSECSEWTWGPCTPSSKDCGMGFREGTCGAQTQRVHCKVPCNWKKEF 77
Cdd:pfam05196 11 GSDCAEWQWGKCVPNSGDCGLGFREGTCKEQTKKIKCKIPCNWKKEF 57
 
Name Accession Description Interval E-value
PTN smart00193
Pleiotrophin / midkine family; Heparin-binding domain family.
 34-79 3.55e-23

Pleiotrophin / midkine family; Heparin-binding domain family.


Pssm-ID: 128490  Cd Length: 80  Bit Score: 84.16  E-value: 3.55e-23
                          10        20        30        40
                  ....*....|....*....|....*....|....*....|....*.
gi 613410247   34 CSEWTWGPCTPSSKDCGMGFREGTCGAQTQRVHCKVPCNWKKEFGA 79
Cdd:smart00193  1 CGEWQWGPCIPNSKDCGLGTREGTCGQETRKLKCKIPCNWKKQFGA 46
PTN_MK_N pfam05196
PTN/MK heparin-binding protein family, N-terminal domain;
31-77 4.85e-21

PTN/MK heparin-binding protein family, N-terminal domain;


Pssm-ID: 461582  Cd Length: 57  Bit Score: 77.88  E-value: 4.85e-21
                         10        20        30        40
                 ....*....|....*....|....*....|....*....|....*..
gi 613410247  31 GSECSEWTWGPCTPSSKDCGMGFREGTCGAQTQRVHCKVPCNWKKEF 77
Cdd:pfam05196 11 GSDCAEWQWGKCVPNSGDCGLGFREGTCKEQTKKIKCKIPCNWKKEF 57
 
Blast search parameters
Data Source: Precalculated data, version = cdd.v.3.21
Preset Options:Database: CDSEARCH/cdd   Low complexity filter: no  Composition Based Adjustment: yes   E-value threshold: 0.01

References:

  • Wang J et al. (2023), "The conserved domain database in 2023", Nucleic Acids Res.51(D)384-8.
  • Lu S et al. (2020), "The conserved domain database in 2020", Nucleic Acids Res.48(D)265-8.
  • Marchler-Bauer A et al. (2017), "CDD/SPARCLE: functional classification of proteins via subfamily domain architectures.", Nucleic Acids Res.45(D)200-3.
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