C3H_HeJ_v3

Organism name:: Mus musculus (house mouse)
BioSample:: SAMEA9544182
BioProject:: PRJEB47108
Submitter:: EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:: 2022/07/01
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_921997125.2 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: CAKLHI02
Genome coverage:: 40x

IDs: 13300971 [UID] 34743608 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_921997125.2	n/a	n/a	C3H_HeJ_v3	Chromosome	Latest GenBank
GCA_921997125.1	n/a	n/a	C3H_HeJ_v2	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	2,532,437,445
Total ungapped length	2,508,366,100
Gaps between scaffolds	0
Number of scaffolds	171
Scaffold N50	127,227,482
Scaffold L50	9
Number of contigs	752
Contig N50	8,562,414
Contig L50	88
Total number of chromosomes and plasmids	21
Number of component sequences (WGS or clone)	171

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	OW971846.1	n/a	n/a	0
Chromosome 2	OW971855.1	n/a	n/a	0
Chromosome 3	OW971864.1	n/a	n/a	0
Chromosome 4	OW971856.1	n/a	n/a	0
Chromosome 5	OW971857.1	n/a	n/a	0
Chromosome 6	OW971858.1	n/a	n/a	0
Chromosome 7	OW971859.1	n/a	n/a	0
Chromosome 8	OW971862.1	n/a	n/a	0
Chromosome 9	OW971860.1	n/a	n/a	0
Chromosome 10	OW971863.1	n/a	n/a	0
Chromosome 11	OW971847.1	n/a	n/a	0
Chromosome 12	OW971848.1	n/a	n/a	0
Chromosome 13	OW971865.1	n/a	n/a	0
Chromosome 14	OW971849.1	n/a	n/a	0
Chromosome 15	OW971850.1	n/a	n/a	0
Chromosome 16	OW971851.1	n/a	n/a	0
Chromosome 17	OW971852.1	n/a	n/a	0
Chromosome 18	OW971853.1	n/a	n/a	0
Chromosome 19	OW971854.1	n/a	n/a	0
Chromosome X	OW971861.1	n/a	n/a	0
unplaced	n/a	n/a	n/a	150

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,532,421,144	170	2,508,349,799	127,227,482	581
Chromosome 1	192,734,160	1	192,706,550	192,734,160	32
Chromosome 2	176,863,632	1	176,297,762	176,863,632	27
Chromosome 3	156,242,237	1	156,148,766	156,242,237	47
Chromosome 4	151,578,546	1	147,281,052	151,578,546	46
Chromosome 5	147,393,320	1	144,031,072	147,393,320	36
Chromosome 6	146,000,485	1	145,968,212	146,000,485	28
Chromosome 7	133,371,210	1	131,645,503	133,371,210	47
Chromosome 8	124,575,252	1	124,472,623	124,575,252	37
Chromosome 9	121,129,556	1	121,107,600	121,129,556	20
Chromosome 10	127,227,482	1	127,133,961	127,227,482	24
Chromosome 11	119,111,306	1	119,105,163	119,111,306	16
Chromosome 12	115,939,335	1	110,784,516	115,939,335	25
Chromosome 13	115,723,577	1	114,153,164	115,723,577	31
Chromosome 14	115,092,357	1	113,532,096	115,092,357	27
Chromosome 15	101,285,478	1	101,280,536	101,285,478	13
Chromosome 16	94,980,622	1	94,954,723	94,980,622	15
Chromosome 17	90,930,989	1	90,869,282	90,930,989	18
Chromosome 18	88,011,295	1	87,999,485	88,011,295	11
Chromosome 19	57,981,240	1	57,972,802	57,981,240	6
Chromosome X	150,844,641	1	145,500,576	150,844,641	72
unplaced	5,404,424	150	5,404,355	56,474	3

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C3H_HeJ_v3

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

History (Show revision history)

Comment

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Assembly Unit Name
Primary Assembly
non-nuclear