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PWK_PhJ_v3

Organism name:
Mus musculus musculus (eastern European house mouse)
BioSample:
SAMEA9544189
BioProject:
PRJEB47108
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/07/01
Assembly level:
Chromosome
Genome representation:
full
GenBank assembly accession:
GCA_921998335.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CAKLHR02
Genome coverage:
40x

IDs: 13301071 [UID] 34743908 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,507,124,360
Total ungapped length2,504,310,389
Gaps between scaffolds0
Number of scaffolds208
Scaffold N50126,992,800
Scaffold L509
Number of contigs412
Contig N5026,698,258
Contig L5028
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)208

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_921998334.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OW971762.1n/an/a0
Chromosome 2OW971763.1n/an/a0
Chromosome 3OW971764.1n/an/a0
Chromosome 4OW971765.1n/an/a0
Chromosome 5OW971768.1n/an/a0
Chromosome 6OW971766.1n/an/a0
Chromosome 7OW971769.1n/an/a0
Chromosome 8OW971771.1n/an/a0
Chromosome 9OW971772.1n/an/a0
Chromosome 10OW971770.1n/an/a0
Chromosome 11OW971773.1n/an/a0
Chromosome 12OW971775.1n/an/a0
Chromosome 13OW971774.1n/an/a0
Chromosome 14OW971776.1n/an/a0
Chromosome 15OW971777.1n/an/a0
Chromosome 16OW971778.1n/an/a0
Chromosome 17OW971779.1n/an/a0
Chromosome 18OW971780.1n/an/a0
Chromosome 19OW971781.1n/an/a0
Chromosome XOW971767.1n/an/a0
unplacedn/an/an/a187

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,507,108,0592072,504,294,088126,992,8002040
Chromosome 1191,190,6311191,186,198191,190,631170
Chromosome 2176,038,6311175,843,829176,038,631100
Chromosome 3156,213,1481156,192,717156,213,148130
Chromosome 4148,118,6211147,514,791148,118,621170
Chromosome 5143,950,6491143,349,872143,950,649110
Chromosome 6144,408,6731144,407,760144,408,67360
Chromosome 7131,603,6081131,140,898131,603,608150
Chromosome 8124,412,8891124,257,751124,412,889100
Chromosome 9121,066,2291121,065,206121,066,22920
Chromosome 10126,992,8001126,990,077126,992,800130
Chromosome 11118,983,7051118,979,456118,983,70560
Chromosome 12113,063,1331113,000,294113,063,133110
Chromosome 13114,040,7071114,038,551114,040,707100
Chromosome 14113,035,1771112,983,383113,035,17760
Chromosome 15100,515,2331100,512,233100,515,23360
Chromosome 1694,648,980194,631,08394,648,98040
Chromosome 1790,512,502190,337,56290,512,502110
Chromosome 1888,136,164188,135,54188,136,16420
Chromosome 1957,699,380157,671,62157,699,38060
Chromosome X144,389,5421143,967,709144,389,542250
unplaced8,087,6571878,087,55657,22030
MoleculeTotal
Length
Mitochondrion MIT16,301