129S1_SvImJ_v3

Organism name:: Mus musculus (house mouse)
BioSample:: SAMEA9544178
BioProject:: PRJEB47108
Submitter:: EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:: 2022/07/01
Assembly level:: Chromosome
Genome representation:: full
GenBank assembly accession:: GCA_921998555.2 (latest)
RefSeq assembly accession:: n/a
RefSeq assembly and GenBank assembly identical:: n/a
WGS Project:: CAKLHM02
Genome coverage:: 40x

IDs: 13301051 [UID] 34743848 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

History (Show revision history)

GenBank Assembly Accession		RefSeq Assembly Accession	Assembly Name	Assembly Level	Status
GCA_921998555.2	n/a	n/a	129S1_SvImJ_v3	Chromosome	Latest GenBank
GCA_921998555.1	n/a	n/a	129S1_SvImJ_v2	Scaffold	Replaced GenBank

Comment

Global statistics

Total sequence length	2,516,264,171
Total ungapped length	2,506,244,609
Gaps between scaffolds	0
Number of scaffolds	180
Scaffold N50	126,792,426
Scaffold L50	9
Number of contigs	1,110
Contig N50	5,000,807
Contig L50	136
Total number of chromosomes and plasmids	21
Number of component sequences (WGS or clone)	180

Molecule name	GenBank sequence		RefSeq sequence	Unlocalized sequences count
Chromosome 1	OW971720.1	n/a	n/a	0
Chromosome 2	OW971721.1	n/a	n/a	0
Chromosome 3	OW971722.1	n/a	n/a	0
Chromosome 4	OW971723.1	n/a	n/a	0
Chromosome 5	OW971726.1	n/a	n/a	0
Chromosome 6	OW971724.1	n/a	n/a	0
Chromosome 7	OW971727.1	n/a	n/a	0
Chromosome 8	OW971729.1	n/a	n/a	0
Chromosome 9	OW971730.1	n/a	n/a	0
Chromosome 10	OW971728.1	n/a	n/a	0
Chromosome 11	OW971731.1	n/a	n/a	0
Chromosome 12	OW971734.1	n/a	n/a	0
Chromosome 13	OW971732.1	n/a	n/a	0
Chromosome 14	OW971733.1	n/a	n/a	0
Chromosome 15	OW971735.1	n/a	n/a	0
Chromosome 16	OW971736.1	n/a	n/a	0
Chromosome 17	OW971737.1	n/a	n/a	0
Chromosome 18	OW971738.1	n/a	n/a	0
Chromosome 19	OW971739.1	n/a	n/a	0
Chromosome X	OW971725.1	n/a	n/a	0
unplaced	n/a	n/a	n/a	159

Molecule	Total Length	Scaffold Count	Ungapped Length	Scaffold N50	Spanned Gaps
All	2,516,247,871	179	2,506,228,309	126,792,426	930
Chromosome 1	192,853,653	1	192,708,301	192,853,653	70
Chromosome 2	177,680,146	1	175,901,429	177,680,146	54
Chromosome 3	156,641,776	1	156,331,791	156,641,776	76
Chromosome 4	147,405,712	1	146,613,788	147,405,712	60
Chromosome 5	145,459,508	1	145,155,948	145,459,508	57
Chromosome 6	147,010,418	1	145,888,663	147,010,418	56
Chromosome 7	131,469,533	1	130,729,376	131,469,533	60
Chromosome 8	124,315,410	1	124,040,740	124,315,410	47
Chromosome 9	121,687,198	1	120,799,465	121,687,198	28
Chromosome 10	126,792,426	1	126,715,463	126,792,426	44
Chromosome 11	119,271,148	1	119,238,894	119,271,148	26
Chromosome 12	112,370,561	1	111,478,898	112,370,561	43
Chromosome 13	114,519,524	1	113,944,758	114,519,524	38
Chromosome 14	113,902,039	1	113,101,172	113,902,039	41
Chromosome 15	101,204,263	1	101,108,534	101,204,263	29
Chromosome 16	94,845,348	1	94,762,613	94,845,348	28
Chromosome 17	90,615,792	1	90,308,192	90,615,792	35
Chromosome 18	87,975,307	1	87,865,672	87,975,307	21
Chromosome 19	58,017,828	1	57,893,887	58,017,828	11
Chromosome X	145,680,608	1	145,169,092	145,680,608	99
unplaced	6,529,673	159	6,471,633	55,344	7

Assembly

Genome Assembly

Result Filters

Organism group

Status

Assembly level

RefSeq category

Exclude

Annotation status

Taxonomy check status

Relation to type material

Assembly type

Sequence release date

Custom date range

Contig N50

Custom range

Scaffold N50

Custom range

Additional filters

Send to:

Download Assembly

129S1_SvImJ_v3

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

History (Show revision history)

Comment

Global statistics

Supplemental Content

Access the data

Assembly Information

Related Information

Recent activity

Global assembly definition

Assembly statistics

Assembly Unit Name
Primary Assembly
non-nuclear