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FVB_NJ_v3

Organism name:
Mus musculus (house mouse)
BioSample:
SAMEA9544185
BioProject:
PRJEB47108
Submitter:
EMBL-EBI, WELLCOME TRUST GENOME CAMPUS, CAMBRIDGE
Date:
2022/07/01
Assembly level:
Chromosome
Genome representation:
full
Excluded from RefSeq:
  • genome length too small
GenBank assembly accession:
GCA_921998635.2 (latest)
RefSeq assembly accession:
n/a
RefSeq assembly and GenBank assembly identical:
n/a
WGS Project:
CAKLHT02
Genome coverage:
40x

IDs: 13301031 [UID] 34743788 [GenBank]

See Genome Information for Mus musculus

Pathogen Detection Resources

There are 65 assemblies for this organism

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History (Show revision history)

Comment

Global statistics

Total sequence length2,516,166,699
Total ungapped length2,474,560,037
Gaps between scaffolds0
Number of scaffolds376
Scaffold N50126,399,372
Scaffold L509
Number of contigs2,818
Contig N501,916,862
Contig L50358
Total number of chromosomes and plasmids21
Number of component sequences (WGS or clone)376

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Global assembly definition

Download the full sequence report
Click on the table row to see sequence details in the table to the right
Assembly Unit Name
Primary Assembly
non-nuclear
Assembly Unit: Primary Assembly (GCA_921998634.2)
Molecule nameGenBank sequenceRefSeq sequenceUnlocalized
sequences count
Chromosome 1OW971699.1n/an/a0
Chromosome 2OW971710.1n/an/a0
Chromosome 3OW971711.1n/an/a0
Chromosome 4OW971712.1n/an/a0
Chromosome 5OW971713.1n/an/a0
Chromosome 6OW971714.1n/an/a0
Chromosome 7OW971715.1n/an/a0
Chromosome 8OW971716.1n/an/a0
Chromosome 9OW971717.1n/an/a0
Chromosome 10OW971700.1n/an/a0
Chromosome 11OW971701.1n/an/a0
Chromosome 12OW971702.1n/an/a0
Chromosome 13OW971703.1n/an/a0
Chromosome 14OW971704.1n/an/a0
Chromosome 15OW971705.1n/an/a0
Chromosome 16OW971706.1n/an/a0
Chromosome 17OW971707.1n/an/a0
Chromosome 18OW971708.1n/an/a0
Chromosome 19OW971709.1n/an/a0
Chromosome XOW971718.1n/an/a0
unplacedn/an/an/a355

Assembly statistics

MoleculeTotal
Length		Scaffold
Count		Ungapped
Length		Scaffold
N50		Spanned
Gaps		Unspanned
Gaps
All2,516,150,3993752,474,543,737126,399,3722,4420
Chromosome 1191,327,0901189,062,487191,327,0901760
Chromosome 2176,247,5041173,953,229176,247,5041500
Chromosome 3155,754,3671152,509,399155,754,3671790
Chromosome 4147,115,4321145,003,848147,115,4321450
Chromosome 5144,882,9641142,643,841144,882,9641520
Chromosome 6145,044,5401142,598,703145,044,5401560
Chromosome 7133,050,7231129,698,673133,050,7231480
Chromosome 8123,381,3311122,354,784123,381,331910
Chromosome 9120,965,6471119,628,330120,965,647980
Chromosome 10126,399,3721124,973,727126,399,3721250
Chromosome 11118,876,1571118,287,493118,876,157690
Chromosome 12114,223,1651110,245,453114,223,1651140
Chromosome 13114,708,5661112,612,275114,708,5661140
Chromosome 14112,781,6511111,171,569112,781,6511050
Chromosome 15100,682,2671100,013,229100,682,267780
Chromosome 1694,688,992193,639,74494,688,992870
Chromosome 1791,350,983189,445,62691,350,983830
Chromosome 1887,307,751186,656,71887,307,751800
Chromosome 1957,443,996156,905,69157,443,996400
Chromosome X146,489,5781139,710,756146,489,5782450
unplaced13,428,32335513,428,16253,15570
MoleculeTotal
Length
Mitochondrion MIT16,300