1GQ7,3NIQ,3NIO


Conserved Protein Domain Family
Agmatinase_PAH

?
cd11592: Agmatinase_PAH 
Click on image for an interactive view with Cn3D
Agmatinase-like family includes proclavaminic acid amidinohydrolase
This agmatinase subfamily contains bacterial and fungal/metazoan enzymes, including proclavaminic acid amidinohydrolase (PAH, EC 3.5.3.22) and Pseudomonas aeruginosa guanidinobutyrase (GbuA) and guanidinopropionase (GpuA). PAH hydrolyzes amidinoproclavaminate to yield proclavaminate and urea in clavulanic acid biosynthesis. Clavulanic acid is an effective inhibitor of beta-lactamases and is used in combination with amoxicillin to prevent the beta-lactam rings of the antibiotic from hydrolysis and, thus keeping the antibiotic biologically active. GbuA hydrolyzes 4-guanidinobutyrate (4-GB) into 4-aminobutyrate and urea while GpuA hydrolyzes 3-guanidinopropionate (3-GP) into beta-alanine and urea. Mutation studies show that significant variations in two active site loops in these two enzymes may be important for substrate specificity. This subfamily belongs to the ureohydrolase superfamily, which includes arginase, agmatinase, proclavaminate amidinohydrolase, and formiminoglutamase.
Statistics
?
PSSM-Id: 212538
Aligned: 78 rows
Threshold Bit Score: 349.851
Created: 19-Dec-2011
Updated: 2-Oct-2020
Structure
?
Program:
Drawing:
Aligned Rows:
 
Conserved site includes 10 residues -Click on image for an interactive view with Cn3D
Feature 1:putative active site [active site]
Evidence:
  • Comment:Inhibition by 1,6-diaminohexane arises from the displacement of the metal-bridging water.

Sequence Alignment
?
Format: Row Display: Color Bits: Type Selection:
Feature 1                                                                                        
1GQ7_A        14 QIPTFMRLPHDpqp--rgyDVVVIGAPYDGGTsyRPGARFGPQAIRSESglIHGVGIdrGPGTFdlINCVDAGDINLTpf 91  Streptomyces cl...
YP_003684137  16 GVRTFMRLPHVrtl--envDFVVLGIPWDDATthRPGARFGPEGIRRVSimLRPWNPywNVKIFdyLSGVDYGDVPVVpg 93  Meiothermus sil...
Q97VA3        14 QISTFGRLPICekn--eeiKAAFLGIPFDDAVtyRPGARFGPMGIRQGSrlLRPYNQflDTYPFdkLNACDMGDINVIpg 91  Sulfolobus solf...
Q75TI1        15 GVRTFMRLEPIktt--ngiDFAVLGVPFDTAAsnRTGQRYGPQHIRNFSvlLRPYNPdmDIDIFayCSGVDYGDVDVIpg 92  Geobacillus ste...
ACZ38082      17 GLRTFARLPHVrdl--agvDVAVFGIPFDTATtfRTGARFGPAAVREMSamLRTYNPslDVNVYdyLSVVDYGDLPTVpg 94  Sphaerobacter t...
ADI14533      17 GIRTFMRLPHVtdlagagiDAAIVGAPFDTGGtyRVGARFGPAGIRHESmlLRPYHPelRVDVTeqLSLVDYGDLPVTpg 96  Truepera radiov...
Q6ANF4        43 GIRTFMRLPYQtdl--qdiDFAVLGIPFDTATtyKPGCRFGPAGIRAAStiLKSYEEvlDVDIFeeCSGVDYGDIDIIpg 120 Desulfotalea ps...
EFB90964      16 NMGTFMRMARIqna--kglDFAIAGAPFDTASsfRSGSRFGPSAIRNIScmMKPNNViqQVNIMdsLTGGDLGDFPIVpg 93  Synergistetes b...
ADB50999      22 GIRTFARCPHAtdw--anaDVAVLGVPFDTATsyRPGARFGPAAIRDQSqlIRPWHAalEVDVFatLSVLDGGDLTVTpg 99  Conexibacter wo...
ZP_02862585   26 NMGTFMRMDKVdsa--kglDFAIAGAPFDTASsfRSGSRFGPNAIRNISamMKPNNVlmQVNIMdgLQGGDIGDFPVIpg 103 Anaerofustis st...
Feature 1                                      #                      # ###           ##         
1GQ7_A        92 dmnIAIDTAQSHLSGLLKAn-aAFLMIGGDHSLTVAALRAVAeqhgpLAVVHLDAHSDTNpafyggryHHGTPFRHGIDE 170 Streptomyces cl...
YP_003684137  94 yieDTYARIESEFEKIARSg-vTPIAMGGDHSVTLGELRGLAkvygpLALVHIDAHLDTLdqyfgrkyNHGTPFRRAVEE 172 Meiothermus sil...
Q97VA3        92 yieDTMNAIQTSLYEIISSknlVPFIAGGDHSITLPILRTLYkkfgkINIVHFDSHYDFWdsywgkkyTHGTWLRRAIEE 171 Sulfolobus solf...
Q75TI1        93 nalRTYDRIVEELRPLLKKn-iVPILMGGDHSITLGHLRAFYerfgpVALVHFDSHSDTWdhyygekyMHGTPFRRAVEE 171 Geobacillus ste...
ACZ38082      95 yieDTYDRVVAAMEPILAEn-vFPVGIGGDHSVTLAELRAIArrygpVGFIQFDSHGDTWdeyfgrkyNHGTPFRRAVEE 173 Sphaerobacter t...
ADI14533      97 ylsESHAQLERGAAELVAAg-vTPFFLGGDHSVSLPLLRAVAqrhgpVGLVHIDAHSDLWegyfggkdTHGTPFRRALEE 175 Truepera radiov...
Q6ANF4       121 hldESFERIEEGMSALLKNd-iIPVVMGGDHSITLPQLRSIVkkhgpVALIHFDAHSDTGsdyfgkpyNHGTTFHWAIKE 199 Desulfotalea ps...
EFB90964      94 yihPSYAAIEAGVAGILSDg-aLPIVLGGDHSITLAELRAVAkkhgpVGLIHFDSHSDLCdevfgekyNHGTPFRRALEE 172 Synergistetes b...
ADB50999     100 naaRTAEQIHAGLRPVLEAg-aTPLVLGGDHSIVLGELRAQAerhgpVGVVLLDAHADTWdeyygeryFHGTPFRRALEE 178 Conexibacter wo...
ZP_02862585  104 yihPTYKAIEEGVKGIIDEd-aVPIVLGGDHSITLAELRAVAkkhgpVALVHFDSHSDLCdevfgekyNHGTPFRRALEE 182 Anaerofustis st...
Feature 1                                                                          # #           
1GQ7_A       171 kliDPAAMVQIGIRGhnpkpdsldYARGHgVRVVTAdefgelgVGGTADLIREKVGQr--PVYVSVDIDVVDPAFAPGTG 248 Streptomyces cl...
YP_003684137 173 glvDPHKSIQVGIRGsnygpedyqGTRDLgYELITMyelqeigLEAALERIHRRVGQh--PCFISIDIDSVDPAYAPGTG 250 Meiothermus sil...
Q97VA3       172 g--LIKEAVQGGIRAstfskedlrDKERLgIRSFTIr-----dLKYNLDTVIREINSlsgPTHVSIDIDVVDPAFAPGTG 244 Sulfolobus solf...
Q75TI1       172 gllDVNHSIQVGMRGplysaddleDARRLgFEVIPMrevrqigFSEVMRRIHQRVGNk--PVFVSYDIDFVDPAFAPGTG 249 Geobacillus ste...
ACZ38082     174 gliDTSRAIQVGMRGslygpgdlqQSRDLgFELWTTddvrregLPAVLEAIRRRVGSg--PVFLTFDIDFVDPSFAPGTG 251 Sphaerobacter t...
ADI14533     176 gllEPARSIQIGLRGslysaedhaLSQRLgFEMVTApelhrvgVQEVARRVRARAGTg--PLYLSFDIDALDPTFAPGTG 253 Truepera radiov...
Q6ANF4       200 gliKPEESTQTGIRGplygrdslkFVRESgMQVITGwelheigINEAIKRIKERISPg-tPVFMSFDIDFLDAAYAPGTG 278 Desulfotalea ps...
EFB90964     173 gliEPSRCIQVGMRGslydpnehkMAADLgMKLIPAhkiremgLDALIAAVKERVGDk--PTFLTFDIDFVDPAYAPGTG 250 Synergistetes b...
ADB50999     179 gliDPRRSLLAGMRGplyaasdldTPREWgFEIVTCdelrtltPAEYGRRVRERIGDg--PTFLSFDIDVLDPAFAPGTG 256 Conexibacter wo...
ZP_02862585  183 gliDPSHSIQIGMRGslydpdehkMAAELgMLLIPGhkvremgSKKLLETALERVGDk--PCFLTFDIDFVDPAYAPGTG 260 Anaerofustis st...
Feature 1                                       #                        
1GQ7_A       249 TPApGGLLSREVLALLRCVGdl-kpVGFDVMEVSPLYDhg-gITSILATEIGAELL 302 Streptomyces clavuligerus
YP_003684137 251 TPEvEGFTSREIMKLVRGLRgl-hfKAADVVEVLPALDpg-eITAYLGGNLIYELI 304 Meiothermus silvanus DSM 9946
Q97VA3       245 TPEvGGLTSFEIIEIVRKLRfd-klVGFDVVEVAPPYDms-eITAMLAANIIYEGM 298 Sulfolobus solfataricus
Q75TI1       250 TPEvGGPTSYEALEYVRGLDgl-niVGFDLVEVLPAYDsg-eMTAILASAIIYEMI 303 Geobacillus stearothermophilus
ACZ38082     252 TPEiGGFTSREAQELVRGLVgi-dfVGMDLVEVLPAHDps-gITALIAANVIFEFL 305 Sphaerobacter thermophilus DSM 20745
ADI14533     254 TPEvGGLSSVQALALLRALAgl-pfVAYDLVEVMPPYDva-gTTCLLAANLVYEML 307 Truepera radiovictrix DSM 17093
Q6ANF4       279 TPEiGGFTTHEALKLVLNCCqgqelVGMDLVEVLPESDna-eITSFAAAGIMHAFL 333 Desulfotalea psychrophila
EFB90964     251 TPEvGGFTSLEALTLMRALTtv-nfVGFDIVEVLPAYDhg-eITAYLAANIVFEFL 304 Synergistetes bacterium W5455
ADB50999     257 TPEiAGLLPHEAVAFLRALAgi-rfTGFDVVEVSPQFDgpgqVTALHAASIGFELL 311 Conexibacter woesei DSM 14684
ZP_02862585  261 TPEvGGFTSWESLEMVRGLKdl-nfIGMDLVEVLPAYDhg-eITAYLGANIVFEFL 314 Anaerofustis stercorihominis DSM 17244

| Disclaimer | Privacy statement | Accessibility |
NCBI Home NCBI Search NCBI SiteMap