nsv1596111
- Organism: Homo sapiens
- Study:nstd128 (Mallick et al. 2016)
- Variant Type:short tandem repeat
- Method Type:Sequencing
- Submitted on:GRCh37 (hg19)
- Variant Calls:3
- Validation:Not tested
- Clinical Assertions: No
- Region Size:20
- Description:MOTIF=[C],NS=[301],REF=[20.0],RL=[20],RPA=[21.
0,22.0],RU=[C],QUAL=[89604.7] - Publication(s):Mallick et al. 2016
Source: NCBI
- Genome View
- Variant Region Details and Evidence
- Validation Information
- Clinical Assertions
- Genotype Information
Genome View
Select assembly:Overlapping variant regions from other studies: 77 SVs from 20 studies. See in: genome view
Overlapping variant regions from other studies: 77 SVs from 20 studies. See in: genome view
Variant Region Placement Information
| Variant Region ID | Placement Type | Score | Assembly | Assembly Unit | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|---|
| nsv1596111 | Remapped | Perfect | GRCh38.p12 | Primary Assembly | First Pass | NC_000011.10 | Chr11 | 73,377,682 | 73,377,701 |
| nsv1596111 | Submitted genomic | GRCh37 (hg19) | Primary Assembly | NC_000011.9 | Chr11 | 73,088,727 | 73,088,746 |
Variant Call Information
| Variant Call ID | Type | Repeat Motif | Method | Analysis |
|---|---|---|---|---|
| nssv9370002 | short tandem repeat | (C) 21 | Sequencing | Genotyping |
| nssv9370003 | short tandem repeat | (C) 22 | Sequencing | Genotyping |
| nssv9370004 | short tandem repeat | (C) 20 (ref) | Sequencing | Genotyping |
Variant Call Placement Information
| Variant Call ID | Placement Type | Score | Assembly | Reciprocity | Sequence ID | Chr | Start | Stop |
|---|---|---|---|---|---|---|---|---|
| nssv9370002 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 73,377,682 | 73,377,701 |
| nssv9370003 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 73,377,682 | 73,377,701 |
| nssv9370004 | Remapped | Perfect | GRCh38.p12 | First Pass | NC_000011.10 | Chr11 | 73,377,682 | 73,377,701 |
| nssv9370002 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 73,088,727 | 73,088,746 | ||
| nssv9370003 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 73,088,727 | 73,088,746 | ||
| nssv9370004 | Submitted genomic | GRCh37 (hg19) | NC_000011.9 | Chr11 | 73,088,727 | 73,088,746 |