GEO DataSets

(Submitter supplied) Our results showed that 951 differentially expressed genes (DEGs) were obtained to response to gibberellin treatment. The 6-h time point was an important phase in the response to exogenous gibberellin. Furthermore, the plant endogenous gibberellin, auxin, ethylene, abscisic acid, and brassinolide signaling transduction pathways were repressed after exogenous GA3 treatment. However, the DEGs (JcAHP1, JcHK3, and JcMYC2, JcMYC4) which were respectively associated with cytokinin and jasmonic acid signaling were up-regulation for 24-h time point following GA3 treatment. more...

Organism:

Jatropha curcas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23941

10 Samples

Download data: TXT

(Submitter supplied) Two Euphorbiaceae oil trees, Vernicia and Jatropha, were chosen to make a comparative transcriptomic study, with a focus on the differential oil accumulation process. Transcriptome sequencing was conducted with seeds at the initial- and fast- stage of oil accumulation from both.

Organism:

Vernicia fordii; Jatropha curcas

Type:

Expression profiling by high throughput sequencing

Platforms:

GPL17695 GPL17722

4 Samples

Download data: FASTA, TXT

(Submitter supplied) Jatropha curcas, a tropical shrub, is an attractive biofuel crop, which produces seeds with a high content of oil and protein. Most J. curcas accessions contain a range of toxins and anti-nutritional compounds, which are unfavorable for human consumption and animal feed. With the goal of better understanding the development of its seeds and to improve Jatropha`s agronomic performance, a two-step approach was performed: 1) generation of the entire transcriptome of six different developmental stages of J. more...

Organism:

Jatropha curcas

Type:

Expression profiling by array

Platform:

GPL24563

31 Samples

Download data: TXT

(Submitter supplied) Our results showed that hundreds of differentially expressed genes (DEGs) were detected in floral sex initiation period, but thousands of DEGs were involved in stamens and ovules development process. Moreover, the DEGs were mainly showed up-regulation in male floral initiation, but mainly down-regulation in female floral initiation. Male floral initiation was associated with the flavonoid biosynthesis pathway while female floral initiation was related to the phytohormone signal transduction pathway. more...

Organism:

Jatropha curcas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL23941

5 Samples

Download data: TXT

(Submitter supplied) MicroRNAs or miRNAs are endogenously encoded small RNAs that play a key role in diverse plant biological processes. Jatropha curcas L. has received much attention as a potential oilseed crop for the production of renewable oil. Here, a sRNA library from mature seeds and three mRNA libraries, from three different stages of seed development, were generated by deep sequencing in order to identify and characterize miRNAs and pre-miRNAs of J. more...

Organism:

Jatropha curcas

Type:

Expression profiling by high throughput sequencing; Non-coding RNA profiling by high throughput sequencing

Platform:

GPL17695

4 Samples

Download data: TXT

(Submitter supplied) Jatropha curcas, a multipurpose plant attracting much attention due to its high oil content and quality for biofuel, is recognized as a drought tolerant species. However, this drought tolerance is still poorly characterized. This study aims to contribute to uncover the molecular background of this tolerance, with the use of a combined approach of transcriptional profiling and morphophysiological characterization along a period of water withholding (49 days) followed by rewatering (7 days). more...

Organism:

Jatropha curcas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL17695

22 Samples

Download data: TXT

(Submitter supplied) Jatropha curcas L. is a potential biofuel plant. Application of exogenous cytokinin (6-benzyladenine, BA) on its inflorescence buds can significantly increase the number of female flowers, thereby improving seed yield. To investigate which genes and signal pathways are involved in the response to cytokinin in J. curcas inflorescence buds, we monitored transcriptional activity in inflorescences at 0, 3, 12, 24, and 48 h after BA treatment using a microarray. more...

Organism:

Jatropha curcas

Type:

Expression profiling by array

Platform:

GPL18092

15 Samples

Download data: TXT

(Submitter supplied) Jatropha is known for its ability to grow in marginal lands and drought prone areas receiving limited amounts of rainfall. Accordingly, gene discovery in Jatropha will be useful for providing a source of genetic information for the improvement of drought tolerance in crops. In this study, a Jatropha oligomicroarray was developed to evaluate the gene expression profile of Jatropha plants during drought stress response and recovery from stress. more...

Organism:

Jatropha curcas

Type:

Expression profiling by array

Platform:

GPL18415

15 Samples

Download data: TXT

(Submitter supplied) Gene expression analysis by high-throughtput RNA-sequencing from roots of waterlogged jatropha (Jatropha curcas). Six leaf stage seedlings (~30 d.o.) were subjected to 24 h of soil waterlogging.

Organism:

Jatropha curcas

Type:

Expression profiling by high throughput sequencing

Platform:

GPL18661

4 Samples

Download data: GFF, TXT

(Submitter supplied) Agilent

Organism:

Jatropha curcas

1 Series

31 Samples

Download data

(Submitter supplied) Arrays of this design have barcodes that begin with 16045089 or 2545089. Orientation: Features are numbered numbered Left-to-Right, Top-to-Bottom as scanned by an Agilent scanner (barcode on the left, DNA on the back surface, scanned through the glass), matching the FeatureNum output from Agilent's Feature Extraction software. The ID column represents the Agilent Feature Extraction feature number. Rows and columns are numbered as scanned by an Axon Scanner (barcode on the bottom, DNA on the front surface). more...

Organism:

Jatropha curcas

1 Series

15 Samples

Download data

(Submitter supplied) Arrays of this design have barcodes that begin with 16030273 or 2530273. Protocol: see manufacturer's web site at http://www.agilent.com/

Organism:

Jatropha curcas

1 Series

15 Samples

Download data: TXT