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CLIP1 CAP-Gly domain containing linker protein 1 [ Sus scrofa (pig) ]

Gene ID: 100153677, updated on 8-Mar-2024

Summary

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Official Symbol
CLIP1provided by VGNC
Official Full Name
CAP-Gly domain containing linker protein 1provided by VGNC
Primary source
VGNC:VGNC:86766
See related
Ensembl:ENSSSCG00000009793
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in psoas major muscle (RPKM 20.9), longissimus dorsi muscle (RPKM 20.0) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See CLIP1 in Genome Data Viewer
Location:
chromosome: 14
Exon count:
28
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 14 NC_010456.5 (30320870..30467095)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 14 NC_010456.4 (32126533..32195050)

Chromosome 14 - NC_010456.5Genomic Context describing neighboring genes Neighboring gene arginine and serine rich coiled-coil 2 Neighboring gene zinc finger CCHC-type containing 8 Neighboring gene VPS33A core subunit of CORVET and HOPS complexes Neighboring gene diablo IAP-binding mitochondrial protein

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables microtubule plus-end binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cytoplasmic microtubule organization IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of microtubule polymerization IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in microtubule plus-end IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
CAP-Gly domain-containing linker protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010456.5 Reference Sscrofa11.1 Primary Assembly

    Range
    30320870..30467095
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021072961.1 → XP_020928620.1  CAP-Gly domain-containing linker protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1UD18, A0A8D0PHI9, A0A8D1YLT5
    Conserved Domains (4) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1415 → 1431
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:703 → 1321
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26511
    Location:343 → 929
    Neuromodulin_N; Gap junction protein N-terminal region

  2. XM_021072963.1 → XP_020928622.1  CAP-Gly domain-containing linker protein 1 isoform X3

    UniProtKB/TrEMBL
    A0A8D1UVC3
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1406 → 1422
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:369 → 1152
    SMC_N; RecF/RecN/SMC N terminal domain

  3. XM_021072964.1 → XP_020928623.1  CAP-Gly domain-containing linker protein 1 isoform X4

    UniProtKB/TrEMBL
    A0A4X1U831, A0A8D0IGP3, A0A8D1UVC3
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1404 → 1420
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:369 → 1152
    SMC_N; RecF/RecN/SMC N terminal domain

  4. XM_021072967.1 → XP_020928626.1  CAP-Gly domain-containing linker protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A287BD91, A0A8D0PF25, A0A8D1A304, A0A8D1LAM0
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1380 → 1396
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:668 → 1286
    SMC_N; RecF/RecN/SMC N terminal domain

  5. XM_021072973.1 → XP_020928632.1  CAP-Gly domain-containing linker protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A287B0R3, A0A8D0PF25, A0A8D1YL74
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1369 → 1385
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:657 → 1275
    SMC_N; RecF/RecN/SMC N terminal domain

  6. XM_021072958.1 → XP_020928617.1  CAP-Gly domain-containing linker protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D0PHI9
    Conserved Domains (4) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1417 → 1433
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:703 → 1321
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26511
    Location:343 → 929
    Neuromodulin_N; Gap junction protein N-terminal region

  7. XM_021072969.1 → XP_020928628.1  CAP-Gly domain-containing linker protein 1 isoform X7

    UniProtKB/TrEMBL
    A0A8D1YL86
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1378 → 1394
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:351 → 1124
    SMC_N; RecF/RecN/SMC N terminal domain

  8. XM_021072976.1 → XP_020928635.1  CAP-Gly domain-containing linker protein 1 isoform X11

    UniProtKB/TrEMBL
    A0A8D1YL86
    Related
    ENSSSCP00000051610.2, ENSSSCT00000047921.2
    Conserved Domains (4) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam09787
    Location:1040 → 1227
    Golgin_A5; Golgin subfamily A member 5
    pfam16641
    Location:1302 → 1318
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:351 → 1120
    SMC_N; RecF/RecN/SMC N terminal domain

  9. XM_021072965.1 → XP_020928624.1  CAP-Gly domain-containing linker protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8D0PF25
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1382 → 1398
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:668 → 1286
    SMC_N; RecF/RecN/SMC N terminal domain

  10. XM_021072977.1 → XP_020928636.1  CAP-Gly domain-containing linker protein 1 isoform X12

    UniProtKB/TrEMBL
    A0A8D0U994
    Conserved Domains (4) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam09787
    Location:1029 → 1216
    Golgin_A5; Golgin subfamily A member 5
    pfam16641
    Location:1291 → 1307
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:351 → 1109
    SMC_N; RecF/RecN/SMC N terminal domain

  11. XM_021072970.1 → XP_020928629.1  CAP-Gly domain-containing linker protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A8D0PF25
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1371 → 1387
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:657 → 1275
    SMC_N; RecF/RecN/SMC N terminal domain

  12. XM_021072975.1 → XP_020928634.1  CAP-Gly domain-containing linker protein 1 isoform X10

    UniProtKB/TrEMBL
    A0A8D1YL86
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1330 → 1346
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:420 → 1261
    SMC_N; RecF/RecN/SMC N terminal domain

  13. XM_021072978.1 → XP_020928637.1  CAP-Gly domain-containing linker protein 1 isoform X13

    UniProtKB/TrEMBL
    A0A8D1YL86
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1256 → 1272
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:420 → 1187
    SMC_N; RecF/RecN/SMC N terminal domain

  14. XM_021072959.1 → XP_020928618.1  CAP-Gly domain-containing linker protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A8D0PHI9
    Conserved Domains (4) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1417 → 1433
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:703 → 1321
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26511
    Location:343 → 929
    Neuromodulin_N; Gap junction protein N-terminal region

  15. XM_021072966.1 → XP_020928625.1  CAP-Gly domain-containing linker protein 1 isoform X5

    UniProtKB/TrEMBL
    A0A8D0PF25
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1382 → 1398
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:668 → 1286
    SMC_N; RecF/RecN/SMC N terminal domain

  16. XM_021072972.1 → XP_020928631.1  CAP-Gly domain-containing linker protein 1 isoform X8

    UniProtKB/TrEMBL
    A0A8D0PF25
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1371 → 1387
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:657 → 1275
    SMC_N; RecF/RecN/SMC N terminal domain

  17. XM_021072962.1 → XP_020928621.1  CAP-Gly domain-containing linker protein 1 isoform X2

    UniProtKB/TrEMBL
    A0A4X1UD18, A0A8D0PHI9, A0A8D1YLT5
    Conserved Domains (4) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1415 → 1431
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:703 → 1321
    SMC_N; RecF/RecN/SMC N terminal domain
    cl26511
    Location:343 → 929
    Neuromodulin_N; Gap junction protein N-terminal region

  18. XM_021072968.1 → XP_020928627.1  CAP-Gly domain-containing linker protein 1 isoform X6

    UniProtKB/TrEMBL
    A0A287BD91, A0A8D0PF25, A0A8D1A304, A0A8D1LAM0
    Related
    ENSSSCP00000042678.3, ENSSSCT00000059890.3
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1380 → 1396
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:668 → 1286
    SMC_N; RecF/RecN/SMC N terminal domain

  19. XM_021072974.1 → XP_020928633.1  CAP-Gly domain-containing linker protein 1 isoform X9

    UniProtKB/TrEMBL
    A0A287B0R3, A0A8D0PF25, A0A8D1YL74
    Conserved Domains (3) summary
    pfam01302
    Location:213 → 277
    CAP_GLY; CAP-Gly domain
    pfam16641
    Location:1369 → 1385
    CLIP1_ZNF; CLIP1 zinc knuckle
    cl25732
    Location:657 → 1275
    SMC_N; RecF/RecN/SMC N terminal domain
Nucleotide Protein
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