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DHRS1 dehydrogenase/reductase 1 [ Sus scrofa (pig) ]

Gene ID: 100519262, updated on 8-Mar-2024

Summary

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Official Symbol
DHRS1provided by VGNC
Official Full Name
dehydrogenase/reductase 1provided by VGNC
Primary source
VGNC:VGNC:87281
See related
Ensembl:ENSSSCG00000001991
Gene type
protein coding
RefSeq status
MODEL
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in kidney (RPKM 50.1), liver (RPKM 39.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See DHRS1 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
9
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 7 NC_010449.5 (74992120..75002154)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 7 NC_010449.4 (80263079..80273096)

Chromosome 7 - NC_010449.5Genomic Context describing neighboring genes Neighboring gene leukotriene B4 receptor 2 Neighboring gene cell death inducing DFFA like effector b Neighboring gene NOP9 nucleolar protein Neighboring gene uncharacterized LOC106504464 Neighboring gene Rab geranylgeranyltransferase subunit alpha

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  2. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
dehydrogenase/reductase SDR family member 1

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010449.5 Reference Sscrofa11.1 Primary Assembly

    Range
    74992120..75002154
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_003128543.4 → XP_003128591.1  dehydrogenase/reductase SDR family member 1 isoform X2

    UniProtKB/TrEMBL
    A0A480JYZ3, A0A4X1SSQ5, A0A8D1AC59, A0A8D1G4P5, F1SGQ0
    Related
    ENSSSCP00000002177.2, ENSSSCT00000002229.4
    Conserved Domains (2) summary
    cd09763
    Location:5 → 271
    DHRS1-like_SDR_c; human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs
    PRK08303
    Location:1 → 271
    PRK08303; short chain dehydrogenase; Provisional

  2. XM_005666234.3 → XP_005666291.1  dehydrogenase/reductase SDR family member 1 isoform X1

    UniProtKB/TrEMBL
    A0A480JYZ3, A0A8D1G4P5
    Conserved Domains (2) summary
    cd09763
    Location:5 → 277
    DHRS1-like_SDR_c; human dehydrogenase/reductase (SDR family) member 1 (DHRS1) -like, classical (c) SDRs
    PRK08303
    Location:1 → 277
    PRK08303; short chain dehydrogenase; Provisional
Nucleotide Protein
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