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LOC110528343 CD209 antigen-like protein D [ Oncorhynchus mykiss (rainbow trout) ]

Gene ID: 110528343, updated on 18-Aug-2023

Summary

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Gene symbol
LOC110528343
Gene description
CD209 antigen-like protein D
See related
Ensembl:ENSOMYG00000037384
Gene type
protein coding
RefSeq status
MODEL
Organism
Oncorhynchus mykiss
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Neopterygii; Teleostei; Protacanthopterygii; Salmoniformes; Salmonidae; Salmoninae; Oncorhynchus
Also known as
CLEC4M; cd209A; cd209D; DC-SIGN
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Genomic context

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See LOC110528343 in Genome Data Viewer
Location:
chromosome: 7
Exon count:
5
Annotation release Status Assembly Chr Location
101 current USDA_OmykA_1.1 (GCF_013265735.2) 7 NC_048571.1 (68322544..68329223, complement)
100 previous assembly Omyk_1.0 (GCF_002163495.1) 7 NC_035083.1 (59414293..59440261, complement)

Chromosome 7 - NC_048571.1Genomic Context describing neighboring genes Neighboring gene protein polybromo-1 Neighboring gene calcium/calmodulin-dependent protein kinase type 1-like Neighboring gene receptor-type tyrosine-protein phosphatase gamma Neighboring gene calcium-dependent secretion activator 1

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Comprehensive and comparative transcription analyses of the complement pathway in rainbow trout. Köbis JM, et al. Fish Shellfish Immunol, 2015 Jan. PMID 25449374
  2. Gene evolution and gene expression after whole genome duplication in fish: the PhyloFish database. Pasquier J, et al. BMC Genomics, 2016 May 18. PMID 27189481, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

General protein information

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Preferred Names
CD209 antigen-like protein D
Names
Dendritic Cell-Specific Intercellular adhesion molecule-3-Grabbing Non-integrin

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Oncorhynchus mykiss Annotation Release 101 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference USDA_OmykA_1.1 Primary Assembly

Genomic

  1. NC_048571.1 Reference USDA_OmykA_1.1 Primary Assembly

    Range
    68322544..68329223 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021610349.2 → XP_021466024.1  CD209 antigen-like protein D isoform X2

    UniProtKB/TrEMBL
    A0A8C7TL59, U6CKF0
    Related
    ENSOMYP00000080733.1, ENSOMYT00000087984.2
    Conserved Domains (1) summary
    cd03590
    Location:55 → 187
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)

  2. XM_021610348.2 → XP_021466023.1  CD209 antigen-like protein D isoform X1

    UniProtKB/TrEMBL
    A0A8C7TL59, L0N7P7
    Related
    ENSOMYP00000110077.1, ENSOMYT00000122215.1
    Conserved Domains (1) summary
    cd03590
    Location:87 → 219
    CLECT_DC-SIGN_like; C-type lectin-like domain (CTLD) of the type found in human dendritic cell (DC)-specific intercellular adhesion molecule 3-grabbing non-integrin (DC-SIGN) and the related receptor, DC-SIGN receptor (DC-SIGNR)
Nucleotide Protein
Heading Accession and Version

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