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tbx2b T-box transcription factor 2b [ Scyliorhinus canicula (smaller spotted catshark) ]

Gene ID: 119975123, updated on 21-Mar-2024

Summary

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Gene symbol
tbx2b
Gene description
T-box transcription factor 2b
Gene type
protein coding
RefSeq status
MODEL
Organism
Scyliorhinus canicula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Chondrichthyes; Elasmobranchii; Galeomorphii; Galeoidea; Carcharhiniformes; Scyliorhinidae; Scyliorhinus
Also known as
Tbx2
Orthologs
human zebrafish all
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Genomic context

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See tbx2b in Genome Data Viewer
Location:
chromosome: 12
Exon count:
7
Annotation release Status Assembly Chr Location
100 current sScyCan1.1 (GCF_902713615.1) 12 NC_052157.1 (158528648..158542055, complement)

Chromosome 12 - NC_052157.1Genomic Context describing neighboring genes Neighboring gene U2 spliceosomal RNA Neighboring gene T-box transcription factor 4 Neighboring gene uncharacterized LOC119975126 Neighboring gene BCAS3 microtubule associated cell migration factor Neighboring gene 60S ribosomal protein L5-A-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_052157.1 Chromosome 12 Reference sScyCan1.1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. A shift in anterior-posterior positional information underlies the fin-to-limb evolution. Onimaru K, et al. Elife, 2015 Aug 18. PMID 26283004, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX2b

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Scyliorhinus canicula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference sScyCan1.1 Primary Assembly

Genomic

  1. NC_052157.1 Reference sScyCan1.1 Primary Assembly

    Range
    158528648..158542055 complement
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_038814682.1 → XP_038670610.1  T-box transcription factor TBX2b isoform X1

    Conserved Domains (2) summary
    pfam12598
    Location:302 → 376
    TBX; T-box transcription factor
    cd20188
    Location:96 → 284
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins

  2. XM_038814683.1 → XP_038670611.1  T-box transcription factor TBX2b isoform X2

    Conserved Domains (2) summary
    pfam12598
    Location:298 → 372
    TBX; T-box transcription factor
    cd20188
    Location:96 → 280
    T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins
Nucleotide Protein
Heading Accession and Version

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