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tbx2b T-box transcription factor 2b [ Polyodon spathula (Mississippi paddlefish) ]

Gene ID: 121305028, updated on 22-Mar-2024

Summary

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Gene symbol
tbx2b
Gene description
T-box transcription factor 2b
See related
EnsemblRapid:ENSPAHG00005020832
Gene type
protein coding
RefSeq status
MODEL
Organism
Polyodon spathula
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Actinopterygii; Chondrostei; Acipenseriformes; Polyodontidae; Polyodon
Also known as
tbx2
Orthologs
human zebrafish all
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Genomic context

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See tbx2b in Genome Data Viewer
Location:
chromosome: 41
Exon count:
7
Annotation release Status Assembly Chr Location
100 current ASM1765450v1 (GCF_017654505.1) 41 NC_054574.1 (274493..285929)

Chromosome 41 - NC_054574.1Genomic Context describing neighboring genes Neighboring gene protein phosphatase 1D-like Neighboring gene BCAS3 microtubule associated cell migration factor Neighboring gene T-box transcription factor 4 Neighboring gene acetyl-CoA carboxylase-like

Genomic regions, transcripts, and products

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Genomic Sequence:
NC_054574.1 Chromosome 41 Reference ASM1765450v1 Primary Assembly

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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Related articles in PubMed

  1. Fin-fold development in paddlefish and catshark and implications for the evolution of the autopod. Tulenko FJ, et al. Proc Biol Sci, 2017 May 31. PMID 28539509, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables DNA-binding transcription factor activity, RNA polymerase II-specific IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in cell fate specification IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in positive regulation of DNA-templated transcription IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in regulation of transcription by RNA polymerase II IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in nucleus IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
T-box transcription factor TBX2b
Names
T-box transcription factor TBX2

NCBI Reference Sequences (RefSeq)

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RefSeqs of Annotated Genomes: Polyodon spathula Annotation Release 100 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference ASM1765450v1 Primary Assembly

Genomic

  1. NC_054574.1 Reference ASM1765450v1 Primary Assembly

    Range
    274493..285929
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_041236518.1 → XP_041092452.1  T-box transcription factor TBX2b isoform X1

    Related
    ENSPAHP00005029382.1, ENSPAHT00005031486.1
    Conserved Domains (2) summary
    smart00425
    Location:95 → 285
    TBOX; Domain first found in the mice T locus (Brachyury) protein
    PHA03307
    Location:314 → 444
    PHA03307; transcriptional regulator ICP4; Provisional

  2. XM_041236519.1 → XP_041092453.1  T-box transcription factor TBX2b isoform X2

    Conserved Domains (2) summary
    smart00425
    Location:95 → 281
    TBOX; Domain first found in the mice T locus (Brachyury) protein
    PHA03307
    Location:310 → 440
    PHA03307; transcriptional regulator ICP4; Provisional
Nucleotide Protein
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