tbx2.S T-box 2 S homeolog [Xenopus laevis (African clawed frog)] - Gene

Summary

Official Symbol: tbx2.S
Official Full Name: T-box 2 S homeolog
Primary source: Xenbase:XB-GENE-6255176
Locus tag: XELAEV_18015290mg
See related: EnsemblRapid:ENSXLAG00005002633
Gene type: protein coding
RefSeq status: PROVISIONAL
Organism: Xenopus laevis
Lineage: Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Amphibia; Batrachia; Anura; Pipoidea; Pipidae; Xenopodinae; Xenopus; Xenopus
Also known as: ET; tbx2; xtbx2; Xltbx2; tbx2-a; tbx2-b
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Genomic context

Location:: chromosome: 2S

Exon count:: 8

Annotation release	Status	Assembly	Chr	Location
101	current	Xenopus_laevis_v10.1 (GCF_017654675.1)	2S	NC_054374.1 (84236468..84252764, complement)
100	previous assembly	Xenopus_laevis_v2 (GCF_001663975.1)	2S	NC_030727.1 (75667555..75681970, complement)

Chromosome 2S - NC_054374.1 Genomic Context describing neighboring genes

Genomic regions, transcripts, and products

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Genomic Sequence:

Go to nucleotide: Graphics FASTA GenBank

Bibliography

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GeneRIFs: Gene References Into Functions

What's a GeneRIF?

Tbx2 mediates dorsal patterning and germ layer suppression through inhibition of BMP/GDF and Activin/Nodal signaling.
Title: Tbx2 mediates dorsal patterning and germ layer suppression through inhibition of BMP/GDF and Activin/Nodal signaling.

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General gene information

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Gene Ontology Provided by Xenbase

Function	Evidence Code	Pubs
enables DNA binding	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity	IEA Inferred from Electronic Annotation more info
enables DNA-binding transcription factor activity, RNA polymerase II-specific	IEA Inferred from Electronic Annotation more info
enables RNA polymerase II cis-regulatory region sequence-specific DNA binding	IEA Inferred from Electronic Annotation more info

Process	Evidence Code	Pubs
acts_upstream_of_or_within cell fate specification	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within positive regulation of DNA-templated transcription	IEA Inferred from Electronic Annotation more info
acts_upstream_of_or_within regulation of transcription by RNA polymerase II	IEA Inferred from Electronic Annotation more info

Component	Evidence Code	Pubs
located_in nucleus	IEA Inferred from Electronic Annotation more info

General protein information

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Preferred Names: T-box transcription factor TBX2-B

Names: T-box protein 2-B

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

NM_001086520.1 → NP_001079989.1 T-box transcription factor TBX2-B

See identical proteins and their annotated locations for NP_001079989.1

Status: PROVISIONAL

Source sequence(s)

BC059285

UniProtKB/Swiss-Prot

Q9IBC8, Q9W7R7

UniProtKB/TrEMBL

A0A974DP73, B7ZQY8

Related

ENSXLAP00005007808.1, ENSXLAT00005007931.1

Conserved Domains (2) summary

pfam12598
Location:285 → 361

TBX; T-box transcription factor

cd00182
Location:84 → 269

TBOX; T-box DNA binding domain of the T-box family of transcriptional regulators. The T-box family is an ancient group that appears to play a critical role in development in all animal species. These genes were uncovered on the basis of similarity to the DNA ...

RefSeqs of Annotated Genomes: Xenopus laevis Annotation Release 101 details...

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Xenopus_laevis_v10.1 Primary Assembly

Genomic

NC_054374.1 Reference Xenopus_laevis_v10.1 Primary Assembly

Range

84236468..84252764 complement

Download

GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

XM_041582980.1 → XP_041438914.1 T-box transcription factor TBX2-B isoform X1

UniProtKB/Swiss-Prot

Q6PCL0, Q9IBC8, Q9W7R7

UniProtKB/TrEMBL

A0A8J1MB29, A0A974DP73, B7ZQY8

Conserved Domains (2) summary

pfam12598
Location:295 → 371

TBX; T-box transcription factor

cd20188
Location:93 → 277

T-box_TBX2_3-like; DNA-binding domain of T-box transcription factor 2 and 3, and related T-box proteins