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ARL1 ADP ribosylation factor like GTPase 1 [ Sus scrofa (pig) ]

Gene ID: 595113, updated on 5-Mar-2024

Summary

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Official Symbol
ARL1provided by VGNC
Official Full Name
ADP ribosylation factor like GTPase 1provided by VGNC
Primary source
VGNC:VGNC:85513
See related
Ensembl:ENSSSCG00000000870
Gene type
protein coding
RefSeq status
VALIDATED
Organism
Sus scrofa
Lineage
Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Laurasiatheria; Artiodactyla; Suina; Suidae; Sus
Expression
Ubiquitous expression in ovary (RPKM 37.9), kidney (RPKM 30.9) and 8 other tissues See more
Orthologs
human mouse all
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Genomic context

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See ARL1 in Genome Data Viewer
Location:
chromosome: 5
Exon count:
7
Annotation release Status Assembly Chr Location
106 current Sscrofa11.1 (GCF_000003025.6) 5 NC_010447.5 (82795741..82812153)
105 previous assembly Sscrofa10.2 (GCF_000003025.5) 5 NC_010447.4 (86794413..86804542)

Chromosome 5 - NC_010447.5Genomic Context describing neighboring genes Neighboring gene uncharacterized LOC110260787 Neighboring gene myosin binding protein C1 Neighboring gene Spi-C transcription factor Neighboring gene UTP20 small subunit processome component Neighboring gene uncharacterized LOC102164671 Neighboring gene solute carrier family 5 member 8 Neighboring gene anoctamin 4

Genomic regions, transcripts, and products

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Go to nucleotide: Graphics FASTA GenBank

Expression

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  • Project title: Transcriptome data used for gene annotation
  • Description: Nine kinds of tissues and a mixture of multiple tissues were sequenced for genome annotation
  • BioProject: PRJNA311523
  • Publication: PMID 27646534
  • Analysis date: Thu Dec 14 17:10:49 2017

Bibliography

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Related articles in PubMed

  1. Porcine transcriptome analysis based on 97 non-normalized cDNA libraries and assembly of 1,021,891 expressed sequence tags. Gorodkin J, et al. Genome Biol, 2007. PMID 17407547, Free PMC Article
  2. Comparative analysis of protein coding sequences from human, mouse and the domesticated pig. Jørgensen FG, et al. BMC Biol, 2005 Jan 28. PMID 15679890, Free PMC Article
  3. PEDE (Pig EST Data Explorer): construction of a database for ESTs derived from porcine full-length cDNA libraries. Uenishi H, et al. Nucleic Acids Res, 2004 Jan 1. PMID 14681463, Free PMC Article

GeneRIFs: Gene References Into Functions

General gene information

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Homology

Gene Ontology Provided by RefSeq

Function Evidence Code Pubs
enables GTP binding IEA
Inferred from Electronic Annotation
more info
 PubMed 
enables GTPase activity IEA
Inferred from Electronic Annotation
more info
 PubMed 
Process Evidence Code Pubs
involved_in intracellular protein transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
involved_in vesicle-mediated transport IEA
Inferred from Electronic Annotation
more info
 PubMed 
Component Evidence Code Pubs
located_in Golgi apparatus IEA
Inferred from Electronic Annotation
more info
 PubMed 
located_in cytoplasm IEA
Inferred from Electronic Annotation
more info
 PubMed 

General protein information

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Preferred Names
ADP-ribosylation factor-like protein 1

NCBI Reference Sequences (RefSeq)

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RefSeqs maintained independently of Annotated Genomes

These reference sequences exist independently of genome builds. Explain

These reference sequences are curated independently of the genome annotation cycle, so their versions may not match the RefSeq versions in the current genome build. Identify version mismatches by comparing the version of the RefSeq in this section to the one reported in Genomic regions, transcripts, and products above.

mRNA and Protein(s)

  1. NM_001031784.2 → NP_001026954.1  ADP-ribosylation factor-like protein 1

    See identical proteins and their annotated locations for NP_001026954.1

    Status: VALIDATED

    Source sequence(s)
    AEMK02000037, AK231369, CV864424, EV895595
    UniProtKB/TrEMBL
    A0A4X1T0K7, A0A5G2R4Z0, A0A8D0NUJ1, A0A8D1JCH6, A0A8D1JID7, A0A8D1JJI7, Q52NJ5
    Related
    ENSSSCP00000033192.1, ENSSSCT00000043304.2
    Conserved Domains (1) summary
    cd04151
    Location:19 → 176
    Arl1; ADP ribosylation factor 1 (Arf1)

RefSeqs of Annotated Genomes: Sus scrofa Annotation Release 106 details...Open this link in a new tab

The following sections contain reference sequences that belong to a specific genome build. Explain

Reference Sscrofa11.1 Primary Assembly

Genomic

  1. NC_010447.5 Reference Sscrofa11.1 Primary Assembly

    Range
    82795741..82812153
    Download
    GenBank, FASTA, Sequence Viewer (Graphics)

mRNA and Protein(s)

  1. XM_021091204.1 → XP_020946863.1  ADP-ribosylation factor-like protein 1 isoform X1

    UniProtKB/TrEMBL
    A0A4X1T0K7, A0A5G2R4Z0, A0A8D0NUJ1, A0A8D1JCH6, A0A8D1JID7, A0A8D1JJI7, Q52NJ5
    Conserved Domains (1) summary
    cd04151
    Location:19 → 176
    Arl1; ADP ribosylation factor 1 (Arf1)
Nucleotide Protein Strain
Heading Accession and Version

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