dbSNP Short Genetic Variations
Welcome to the Reference SNP (rs) Report
All alleles are reported in the Forward orientation. Click on the Variant Details tab for details on Genomic Placement, Gene, and Amino Acid changes. HGVS names are in the HGVS tab.
Reference SNP (rs) Report
This page reports data for a single dbSNP Reference SNP variation (RefSNP or rs) from the new redesigned dbSNP build.
Top of the page reports a concise summary for the rs, with more specific details included in the corresponding tabs below.
All alleles are reported in the Forward orientation. Use the Genomic View to inspect the nucleotides flanking the variant, and its neighbors.
For more information see Help documentation.
rs6051702
Current Build 156
Released September 21, 2022
- Organism
- Homo sapiens
- Position
-
chr20:3271278 (GRCh38.p14) Help
The anchor position for this RefSNP. Includes all nucleotides potentially affected by this change, thus it can differ from HGVS, which is right-shifted. See here for details.
- Alleles
- A>C
- Variation Type
- SNV Single Nucleotide Variation
- Frequency
-
C=0.201047 (53215/264690, TOPMED)C=0.195496 (27378/140044, GnomAD)C=0.18755 (13335/71100, ALFA) (+ 19 more)
- Clinical Significance
- Not Reported in ClinVar
- Gene : Consequence
- DNAAF9 : Intron Variant
- Publications
- 17 citations
- Genomic View
- See rs on genome
ALFA Allele Frequency
The ALFA project provide aggregate allele frequency from dbGaP. More information is available on the project page including descriptions, data access, and terms of use.
| Population | Group | Sample Size | Ref Allele | Alt Allele |
|---|---|---|---|---|
| Total | Global | 71100 | A=0.81245 | C=0.18755 |
| European | Sub | 58776 | A=0.81331 | C=0.18669 |
| African | Sub | 4502 | A=0.7623 | C=0.2377 |
| African Others | Sub | 170 | A=0.741 | C=0.259 |
| African American | Sub | 4332 | A=0.7632 | C=0.2368 |
| Asian | Sub | 186 | A=0.903 | C=0.097 |
| East Asian | Sub | 146 | A=0.911 | C=0.089 |
| Other Asian | Sub | 40 | A=0.88 | C=0.12 |
| Latin American 1 | Sub | 246 | A=0.825 | C=0.175 |
| Latin American 2 | Sub | 1226 | A=0.8295 | C=0.1705 |
| South Asian | Sub | 4954 | A=0.8423 | C=0.1577 |
| Other | Sub | 1210 | A=0.8008 | C=0.1992 |
Frequency tab displays a table of the reference and alternate allele frequencies reported by various studies and populations. Table lines, where Population="Global" refer to the entire study population, whereas lines, where Group="Sub", refer to a study-specific population subgroupings (i.e. AFR, CAU, etc.), if available. Frequency for the alternate allele (Alt Allele) is a ratio of samples observed-to-total, where the numerator (observed samples) is the number of chromosomes in the study with the minor allele present (found in "Sample size", where Group="Sub"), and the denominator (total samples) is the total number of all chromosomes in the study for the variant (found in "Sample size", where Group="Study-wide" and Population="Global").
Download| Study | Population | Group | Sample Size | Ref Allele | Alt Allele |
|---|---|---|---|---|---|
| TopMed | Global | Study-wide | 264690 | A=0.798953 | C=0.201047 |
| gnomAD - Genomes | Global | Study-wide | 140044 | A=0.804504 | C=0.195496 |
| gnomAD - Genomes | European | Sub | 75900 | A=0.82374 | C=0.17626 |
| gnomAD - Genomes | African | Sub | 41938 | A=0.75886 | C=0.24114 |
| gnomAD - Genomes | American | Sub | 13610 | A=0.82417 | C=0.17583 |
| gnomAD - Genomes | Ashkenazi Jewish | Sub | 3316 | A=0.8115 | C=0.1885 |
| gnomAD - Genomes | East Asian | Sub | 3132 | A=0.8538 | C=0.1462 |
| gnomAD - Genomes | Other | Sub | 2148 | A=0.8087 | C=0.1913 |
| Allele Frequency Aggregator | Total | Global | 71100 | A=0.81245 | C=0.18755 |
| Allele Frequency Aggregator | European | Sub | 58776 | A=0.81331 | C=0.18669 |
| Allele Frequency Aggregator | South Asian | Sub | 4954 | A=0.8423 | C=0.1577 |
| Allele Frequency Aggregator | African | Sub | 4502 | A=0.7623 | C=0.2377 |
| Allele Frequency Aggregator | Latin American 2 | Sub | 1226 | A=0.8295 | C=0.1705 |
| Allele Frequency Aggregator | Other | Sub | 1210 | A=0.8008 | C=0.1992 |
| Allele Frequency Aggregator | Latin American 1 | Sub | 246 | A=0.825 | C=0.175 |
| Allele Frequency Aggregator | Asian | Sub | 186 | A=0.903 | C=0.097 |
| 14KJPN | JAPANESE | Study-wide | 28258 | A=0.81379 | C=0.18621 |
| 8.3KJPN | JAPANESE | Study-wide | 16760 | A=0.81396 | C=0.18604 |
| 1000Genomes_30x | Global | Study-wide | 6404 | A=0.8140 | C=0.1860 |
| 1000Genomes_30x | African | Sub | 1786 | A=0.7497 | C=0.2503 |
| 1000Genomes_30x | Europe | Sub | 1266 | A=0.8136 | C=0.1864 |
| 1000Genomes_30x | South Asian | Sub | 1202 | A=0.8403 | C=0.1597 |
| 1000Genomes_30x | East Asian | Sub | 1170 | A=0.8641 | C=0.1359 |
| 1000Genomes_30x | American | Sub | 980 | A=0.840 | C=0.160 |
| 1000Genomes | Global | Study-wide | 5008 | A=0.8159 | C=0.1841 |
| 1000Genomes | African | Sub | 1322 | A=0.7587 | C=0.2413 |
| 1000Genomes | East Asian | Sub | 1008 | A=0.8621 | C=0.1379 |
| 1000Genomes | Europe | Sub | 1006 | A=0.8131 | C=0.1869 |
| 1000Genomes | South Asian | Sub | 978 | A=0.842 | C=0.158 |
| 1000Genomes | American | Sub | 694 | A=0.826 | C=0.174 |
| Genetic variation in the Estonian population | Estonian | Study-wide | 4480 | A=0.8319 | C=0.1681 |
| The Avon Longitudinal Study of Parents and Children | PARENT AND CHILD COHORT | Study-wide | 3854 | A=0.7875 | C=0.2125 |
| UK 10K study - Twins | TWIN COHORT | Study-wide | 3708 | A=0.8072 | C=0.1928 |
| KOREAN population from KRGDB | KOREAN | Study-wide | 2922 | A=0.8614 | C=0.1386 |
| HGDP-CEPH-db Supplement 1 | Global | Study-wide | 2084 | A=0.8594 | C=0.1406 |
| HGDP-CEPH-db Supplement 1 | Est_Asia | Sub | 470 | A=0.855 | C=0.145 |
| HGDP-CEPH-db Supplement 1 | Central_South_Asia | Sub | 414 | A=0.853 | C=0.147 |
| HGDP-CEPH-db Supplement 1 | Middle_Est | Sub | 350 | A=0.906 | C=0.094 |
| HGDP-CEPH-db Supplement 1 | Europe | Sub | 320 | A=0.787 | C=0.212 |
| HGDP-CEPH-db Supplement 1 | Africa | Sub | 242 | A=0.802 | C=0.198 |
| HGDP-CEPH-db Supplement 1 | America | Sub | 216 | A=0.935 | C=0.065 |
| HGDP-CEPH-db Supplement 1 | Oceania | Sub | 72 | A=0.99 | C=0.01 |
| HapMap | Global | Study-wide | 1892 | A=0.8171 | C=0.1829 |
| HapMap | American | Sub | 770 | A=0.827 | C=0.173 |
| HapMap | African | Sub | 692 | A=0.805 | C=0.195 |
| HapMap | Asian | Sub | 254 | A=0.811 | C=0.189 |
| HapMap | Europe | Sub | 176 | A=0.830 | C=0.170 |
| Genome of the Netherlands Release 5 | Genome of the Netherlands | Study-wide | 998 | A=0.809 | C=0.191 |
| CNV burdens in cranial meningiomas | Global | Study-wide | 792 | A=0.859 | C=0.141 |
| CNV burdens in cranial meningiomas | CRM | Sub | 792 | A=0.859 | C=0.141 |
| Northern Sweden | ACPOP | Study-wide | 600 | A=0.893 | C=0.107 |
| Qatari | Global | Study-wide | 216 | A=0.898 | C=0.102 |
| A Vietnamese Genetic Variation Database | Global | Study-wide | 214 | A=0.893 | C=0.107 |
| SGDP_PRJ | Global | Study-wide | 136 | A=0.463 | C=0.537 |
| Ancient Sardinia genome-wide 1240k capture data generation and analysis | Global | Study-wide | 46 | A=0.83 | C=0.17 |
| The Danish reference pan genome | Danish | Study-wide | 40 | A=0.82 | C=0.17 |
| Siberian | Global | Study-wide | 14 | A=0.36 | C=0.64 |
Variant Details tab shows known variant placements on genomic sequences: chromosomes (NC_), RefSeqGene, pseudogenes or genomic regions (NG_), and in a separate table: on transcripts (NM_) and protein sequences (NP_). The corresponding transcript and protein locations are listed in adjacent lines, along with molecular consequences from Sequence Ontology. When no protein placement is available, only the transcript is listed. Column "Codon[Amino acid]" shows the actual base change in the format of "Reference > Alternate" allele, including the nucleotide codon change in transcripts, and the amino acid change in proteins, respectively, allowing for known ribosomal slippage sites. To view nucleotides adjacent to the variant use the Genomic View at the bottom of the page - zoom into the sequence until the nucleotides around the variant become visible.
| Sequence name | Change |
|---|---|
| GRCh38.p14 chr 20 | NC_000020.11:g.3271278A>C |
| GRCh37.p13 chr 20 | NC_000020.10:g.3251924A>C |
| DNAAF9 RefSeqGene | NG_031974.2:g.141385T>G |
| Molecule type | Change | Amino acid[Codon] | SO Term |
|---|---|---|---|
| DNAAF9 transcript |
NM_001009984.3:c.2651-716… NM_001009984.3:c.2651-716T>G |
N/A | Intron Variant |
| DNAAF9 transcript variant X1 |
XM_005260684.5:c.2648-716… XM_005260684.5:c.2648-716T>G |
N/A | Intron Variant |
| DNAAF9 transcript variant X4 |
XM_005260687.6:c.896-716T… XM_005260687.6:c.896-716T>G |
N/A | Intron Variant |
| DNAAF9 transcript variant X3 |
XM_011529208.4:c.896-716T… XM_011529208.4:c.896-716T>G |
N/A | Intron Variant |
| DNAAF9 transcript variant X2 | XM_047440081.1:c. | N/A | Genic Downstream Transcript Variant |
Clinical Significance tab shows a list of clinical significance entries from ClinVar associated with the variation, per allele. Click on the RCV accession (i.e. RCV000001615.2) or Allele ID (i.e. 12274) to access full ClinVar report.
Aliases tab displays HGVS names representing the variant placements and allele changes on genomic, transcript and protein sequences, per allele. HGVS name is an expression for reporting sequence accession and version, sequence type, position, and allele change. The column "Note" can have two values: "diff" means that there is a difference between the reference allele (variation interval) at the placement reported in HGVS name and the reference alleles reported in other HGVS names, and "rev" means that the sequence of this variation interval at the placement reported in HGVS name is in reverse orientation to the sequence(s) of this variation in other HGVS names not labeled as "rev".
| Placement | A= | C |
|---|---|---|
| GRCh38.p14 chr 20 | NC_000020.11:g.3271278= | NC_000020.11:g.3271278A>C |
| GRCh37.p13 chr 20 | NC_000020.10:g.3251924= | NC_000020.10:g.3251924A>C |
| DNAAF9 RefSeqGene | NG_031974.2:g.141385= | NG_031974.2:g.141385T>G |
| C20orf194 transcript | NM_001009984.2:c.2651-716= | NM_001009984.2:c.2651-716T>G |
| DNAAF9 transcript | NM_001009984.3:c.2651-716= | NM_001009984.3:c.2651-716T>G |
| C20orf194 transcript variant X1 | XM_005260684.1:c.2648-716= | XM_005260684.1:c.2648-716T>G |
| DNAAF9 transcript variant X1 | XM_005260684.5:c.2648-716= | XM_005260684.5:c.2648-716T>G |
| C20orf194 transcript variant X2 | XM_005260685.1:c.2258-716= | XM_005260685.1:c.2258-716T>G |
| C20orf194 transcript variant X4 | XM_005260687.1:c.896-716= | XM_005260687.1:c.896-716T>G |
| DNAAF9 transcript variant X4 | XM_005260687.6:c.896-716= | XM_005260687.6:c.896-716T>G |
| DNAAF9 transcript variant X3 | XM_011529208.4:c.896-716= | XM_011529208.4:c.896-716T>G |
Submissions tab displays variations originally submitted to dbSNP, now supporting this RefSNP cluster (rs). We display Submitter handle, Submission identifier, Date and Build number, when the submission appeared for the first time. Direct submissions to dbSNP have Submission ID in the form of an ss-prefixed number (ss#). Other supporting variations are listed in the table without ss#.
| No | Submitter | Submission ID | Date (Build) |
|---|---|---|---|
| 1 | SC_SNP | ss8364195 | Apr 21, 2003 (114) |
| 2 | BCM_SSAHASNP | ss10955350 | Jul 11, 2003 (117) |
| 3 | CSHL-HAPMAP | ss20123128 | Feb 27, 2004 (120) |
| 4 | PERLEGEN | ss23499797 | Sep 20, 2004 (123) |
| 5 | ILLUMINA | ss66845614 | Nov 29, 2006 (127) |
| 6 | ILLUMINA | ss67438276 | Nov 29, 2006 (127) |
| 7 | ILLUMINA | ss67792172 | Nov 29, 2006 (127) |
| 8 | CSHL-HAPMAP | ss68415277 | Jan 12, 2007 (127) |
| 9 | ILLUMINA | ss70856161 | May 25, 2008 (130) |
| 10 | ILLUMINA | ss71442633 | May 16, 2007 (127) |
| 11 | ILLUMINA | ss75896088 | Dec 07, 2007 (129) |
| 12 | ILLUMINA | ss79215310 | Dec 15, 2007 (130) |
| 13 | KRIBB_YJKIM | ss84454783 | Dec 15, 2007 (130) |
| 14 | BGI | ss103716478 | Dec 01, 2009 (131) |
| 15 | ILLUMINA | ss122507440 | Dec 01, 2009 (131) |
| 16 | ILLUMINA | ss154350876 | Dec 01, 2009 (131) |
| 17 | ILLUMINA | ss159527187 | Dec 01, 2009 (131) |
| 18 | ENSEMBL | ss161318110 | Dec 01, 2009 (131) |
| 19 | ILLUMINA | ss172089524 | Jul 04, 2010 (132) |
| 20 | ILLUMINA | ss173970534 | Jul 04, 2010 (132) |
| 21 | 1000GENOMES | ss228224930 | Jul 14, 2010 (132) |
| 22 | 1000GENOMES | ss237740207 | Jul 15, 2010 (132) |
| 23 | 1000GENOMES | ss243931520 | Jul 15, 2010 (132) |
| 24 | GMI | ss283278759 | May 04, 2012 (137) |
| 25 | PJP | ss292565831 | May 09, 2011 (134) |
| 26 | TISHKOFF | ss566099946 | Apr 25, 2013 (138) |
| 27 | SSMP | ss661969757 | Apr 25, 2013 (138) |
| 28 | ILLUMINA | ss825545828 | Apr 01, 2015 (144) |
| 29 | ILLUMINA | ss833038446 | Jul 13, 2019 (153) |
| 30 | EVA-GONL | ss994482925 | Aug 21, 2014 (142) |
| 31 | JMKIDD_LAB | ss1082028795 | Aug 21, 2014 (142) |
| 32 | 1000GENOMES | ss1363860066 | Aug 21, 2014 (142) |
| 33 | EVA_GENOME_DK | ss1579413361 | Apr 01, 2015 (144) |
| 34 | EVA_UK10K_ALSPAC | ss1638300678 | Apr 01, 2015 (144) |
| 35 | EVA_UK10K_TWINSUK | ss1681294711 | Apr 01, 2015 (144) |
| 36 | EVA_DECODE | ss1698537262 | Apr 01, 2015 (144) |
| 37 | EVA_SVP | ss1713674718 | Apr 01, 2015 (144) |
| 38 | HAMMER_LAB | ss1809396531 | Sep 08, 2015 (146) |
| 39 | WEILL_CORNELL_DGM | ss1937991872 | Feb 12, 2016 (147) |
| 40 | GENOMED | ss1969077204 | Jul 19, 2016 (147) |
| 41 | JJLAB | ss2029772739 | Sep 14, 2016 (149) |
| 42 | USC_VALOUEV | ss2158326800 | Dec 20, 2016 (150) |
| 43 | HUMAN_LONGEVITY | ss2240904138 | Dec 20, 2016 (150) |
| 44 | GRF | ss2703998461 | Nov 08, 2017 (151) |
| 45 | GNOMAD | ss2964863050 | Nov 08, 2017 (151) |
| 46 | SWEGEN | ss3017783520 | Nov 08, 2017 (151) |
| 47 | BIOINF_KMB_FNS_UNIBA | ss3028718353 | Nov 08, 2017 (151) |
| 48 | CSHL | ss3352392577 | Nov 08, 2017 (151) |
| 49 | ILLUMINA | ss3638331336 | Oct 12, 2018 (152) |
| 50 | ILLUMINA | ss3639169164 | Oct 12, 2018 (152) |
| 51 | ILLUMINA | ss3639598528 | Oct 12, 2018 (152) |
| 52 | ILLUMINA | ss3643295134 | Oct 12, 2018 (152) |
| 53 | EGCUT_WGS | ss3684497108 | Jul 13, 2019 (153) |
| 54 | EVA_DECODE | ss3706454351 | Jul 13, 2019 (153) |
| 55 | ACPOP | ss3743201419 | Jul 13, 2019 (153) |
| 56 | EVA | ss3758357381 | Jul 13, 2019 (153) |
| 57 | KHV_HUMAN_GENOMES | ss3821529039 | Jul 13, 2019 (153) |
| 58 | EVA | ss3835558942 | Apr 27, 2020 (154) |
| 59 | EVA | ss3841403095 | Apr 27, 2020 (154) |
| 60 | EVA | ss3846910496 | Apr 27, 2020 (154) |
| 61 | HGDP | ss3847658540 | Apr 27, 2020 (154) |
| 62 | SGDP_PRJ | ss3888622025 | Apr 27, 2020 (154) |
| 63 | KRGDB | ss3938803080 | Apr 27, 2020 (154) |
| 64 | EVA | ss3984745923 | Apr 27, 2021 (155) |
| 65 | EVA | ss3985863621 | Apr 27, 2021 (155) |
| 66 | EVA | ss4017834591 | Apr 27, 2021 (155) |
| 67 | TOPMED | ss5080519140 | Apr 27, 2021 (155) |
| 68 | TOMMO_GENOMICS | ss5228612366 | Apr 27, 2021 (155) |
| 69 | EVA | ss5237600913 | Apr 27, 2021 (155) |
| 70 | 1000G_HIGH_COVERAGE | ss5307904641 | Oct 13, 2022 (156) |
| 71 | HUGCELL_USP | ss5500322643 | Oct 13, 2022 (156) |
| 72 | EVA | ss5512139947 | Oct 13, 2022 (156) |
| 73 | 1000G_HIGH_COVERAGE | ss5613898553 | Oct 13, 2022 (156) |
| 74 | SANFORD_IMAGENETICS | ss5624478865 | Oct 13, 2022 (156) |
| 75 | SANFORD_IMAGENETICS | ss5662759710 | Oct 13, 2022 (156) |
| 76 | TOMMO_GENOMICS | ss5787535940 | Oct 13, 2022 (156) |
| 77 | YY_MCH | ss5817769974 | Oct 13, 2022 (156) |
| 78 | EVA | ss5845371340 | Oct 13, 2022 (156) |
| 79 | EVA | ss5847912390 | Oct 13, 2022 (156) |
| 80 | EVA | ss5853045035 | Oct 13, 2022 (156) |
| 81 | EVA | ss5922467348 | Oct 13, 2022 (156) |
| 82 | EVA | ss5957657494 | Oct 13, 2022 (156) |
| 83 | EVA | ss5979608243 | Oct 13, 2022 (156) |
| 84 | 1000Genomes | NC_000020.10 - 3251924 | Oct 12, 2018 (152) |
| 85 | 1000Genomes_30x | NC_000020.11 - 3271278 | Oct 13, 2022 (156) |
| 86 | The Avon Longitudinal Study of Parents and Children | NC_000020.10 - 3251924 | Oct 12, 2018 (152) |
| 87 | Genetic variation in the Estonian population | NC_000020.10 - 3251924 | Oct 12, 2018 (152) |
| 88 | The Danish reference pan genome | NC_000020.10 - 3251924 | Apr 27, 2020 (154) |
| 89 | gnomAD - Genomes | NC_000020.11 - 3271278 | Apr 27, 2021 (155) |
| 90 | Genome of the Netherlands Release 5 | NC_000020.10 - 3251924 | Apr 27, 2020 (154) |
| 91 | HGDP-CEPH-db Supplement 1 | NC_000020.9 - 3199924 | Apr 27, 2020 (154) |
| 92 | HapMap | NC_000020.11 - 3271278 | Apr 27, 2020 (154) |
| 93 | KOREAN population from KRGDB | NC_000020.10 - 3251924 | Apr 27, 2020 (154) |
| 94 | Northern Sweden | NC_000020.10 - 3251924 | Jul 13, 2019 (153) |
| 95 | Ancient Sardinia genome-wide 1240k capture data generation and analysis | NC_000020.10 - 3251924 | Apr 27, 2021 (155) |
| 96 | CNV burdens in cranial meningiomas | NC_000020.10 - 3251924 | Apr 27, 2021 (155) |
| 97 | Qatari | NC_000020.10 - 3251924 | Apr 27, 2020 (154) |
| 98 | SGDP_PRJ | NC_000020.10 - 3251924 | Apr 27, 2020 (154) |
| 99 | Siberian | NC_000020.10 - 3251924 | Apr 27, 2020 (154) |
| 100 | 8.3KJPN | NC_000020.10 - 3251924 | Apr 27, 2021 (155) |
| 101 | 14KJPN | NC_000020.11 - 3271278 | Oct 13, 2022 (156) |
| 102 | TopMed | NC_000020.11 - 3271278 | Apr 27, 2021 (155) |
| 103 | UK 10K study - Twins | NC_000020.10 - 3251924 | Oct 12, 2018 (152) |
| 104 | A Vietnamese Genetic Variation Database | NC_000020.10 - 3251924 | Jul 13, 2019 (153) |
| 105 | ALFA | NC_000020.11 - 3271278 | Apr 27, 2021 (155) |
History tab displays RefSNPs (Associated ID) from previous builds (Build) that now support the current RefSNP, and the dates, when the history was updated for each Associated ID (History Updated).
| Associated ID | History Updated (Build) |
|---|---|
| rs7265818 | Aug 26, 2003 (117) |
| rs59587953 | May 25, 2008 (130) |
| Submission IDs | Observation SPDI | Canonical SPDI | Source RSIDs |
|---|---|---|---|
| 336432, ss283278759, ss292565831, ss825545828, ss1698537262, ss1713674718, ss3639169164, ss3639598528, ss3643295134, ss3847658540 | NC_000020.9:3199923:A:C | NC_000020.11:3271277:A:C | (self) |
| 77292215, 42782238, 30235356, 5578300, 19062611, 45980474, 16486284, 1089548, 295489, 20033794, 40639005, 10843154, 86581673, 42782238, 9444403, ss228224930, ss237740207, ss243931520, ss566099946, ss661969757, ss833038446, ss994482925, ss1082028795, ss1363860066, ss1579413361, ss1638300678, ss1681294711, ss1809396531, ss1937991872, ss1969077204, ss2029772739, ss2158326800, ss2703998461, ss2964863050, ss3017783520, ss3352392577, ss3638331336, ss3684497108, ss3743201419, ss3758357381, ss3835558942, ss3841403095, ss3888622025, ss3938803080, ss3984745923, ss3985863621, ss4017834591, ss5228612366, ss5237600913, ss5512139947, ss5624478865, ss5662759710, ss5845371340, ss5847912390, ss5957657494, ss5979608243 | NC_000020.10:3251923:A:C | NC_000020.11:3271277:A:C | (self) |
| 101424488, 545036752, 2054369, 121373044, 355628085, 3809703057, ss2240904138, ss3028718353, ss3706454351, ss3821529039, ss3846910496, ss5080519140, ss5307904641, ss5500322643, ss5613898553, ss5787535940, ss5817769974, ss5853045035, ss5922467348 | NC_000020.11:3271277:A:C | NC_000020.11:3271277:A:C | (self) |
| ss8364195, ss10955350, ss20123128, ss23499797, ss66845614, ss67438276, ss67792172, ss68415277, ss70856161, ss71442633, ss75896088, ss79215310, ss84454783, ss103716478, ss122507440, ss154350876, ss159527187, ss161318110, ss172089524, ss173970534 | NT_011387.8:3191923:A:C | NC_000020.11:3271277:A:C | (self) |
Publications tab displays PubMed articles citing the variation as a listing of PMID, Title, Author, Year, Journal, ordered by Year, descending.
| PMID | Title | Author | Year | Journal |
|---|---|---|---|---|
| 20547162 | Variants in the ITPA gene protect against ribavirin-induced hemolytic anemia and decrease the need for ribavirin dose reduction. | Thompson AJ et al. | 2010 | Gastroenterology |
| 20633102 | Hepatitis C: viral and host factors associated with non-response to pegylated interferon plus ribavirin. | Asselah T et al. | 2010 | Liver international |
| 20977565 | ITPA gene variant protects against anemia induced by pegylated interferon-α and ribavirin therapy for Japanese patients with chronic hepatitis C. | Sakamoto N et al. | 2010 | Hepatology research |
| 21441355 | Detection of common single nucleotide polymorphisms synthesizing quantitative trait association of rarer causal variants. | Takeuchi F et al. | 2011 | Genome research |
| 21703177 | Genome-wide association study of interferon-related cytopenia in chronic hepatitis C patients. | Thompson AJ et al. | 2012 | Journal of hepatology |
| 22158703 | Variants in the ITPA gene protect against ribavirin-induced hemolytic anemia in HIV/HCV-coinfected patients with all HCV genotypes. | Naggie S et al. | 2012 | The Journal of infectious diseases |
| 23850877 | Effect of gender and ITPA polymorphisms on ribavirin-induced anemia in chronic hepatitis C patients. | Scherzer TM et al. | 2013 | Journal of hepatology |
| 25287662 | FLT3 expression and IL10 promoter polymorphism in acute myeloid leukemia with RUNX1-RUNX1T1. | Kim M et al. | 2015 | Molecular biology reports |
| 25611567 | Prevalence of abnormal glycometabolism in treatment-naive patients with hepatitis C virus infection in a Chinese Han population. | Rao H et al. | 2015 | Journal of gastroenterology and hepatology |
| 25713999 | VDR gene polymorphisms impact on anemia at 2 weeks of anti-HCV therapy: a possible mechanism for early RBV-induced anemia. | Cusato J et al. | 2015 | Pharmacogenetics and genomics |
| 26071337 | Role of ITPA and SLC28A2 genes in the prediction of anaemia associated with protease inhibitor plus ribavirin and peginterferon in hepatitis C treatment. | Ampuero J et al. | 2015 | Journal of clinical virology |
| 26438033 | Relationship between ITPA polymorphisms and hemolytic anemia in HCV-infected patients after ribavirin-based therapy: a meta-analysis. | Pineda-Tenor D et al. | 2015 | Journal of translational medicine |
| 26650626 | ITPA Genotypes Predict Anemia but Do Not Affect Virological Response with Interferon-Free Faldaprevir, Deleobuvir, and Ribavirin for HCV Infection. | Asselah T et al. | 2015 | PloS one |
| 27148387 | The ITPA and C20orf194 Polymorphisms and Hematological Changes During Treatment With Pegylated-Interferon Plus Ribavirin in Patients With Chronic Hepatitis C. | Pouryasin M et al. | 2016 | Hepatitis monthly |
| 27770805 | A disease spectrum for ITPA variation: advances in biochemical and clinical research. | Burgis NE et al. | 2016 | Journal of biomedical science |
| 28198349 | Impact of ITPA gene polymorphisms on the risk of ribavirin-induced haemolytic anaemia using interferon-free antivirals for chronic hepatitis C. | Esposito I et al. | 2017 | Antiviral therapy |
| 31359493 | Inosine triphosphate pyrophosphatase polymorphisms are predictors of anemia in Chinese patients with chronic hepatitis C during therapy with ribavirin and interferon. | Chi X et al. | 2020 | Journal of gastroenterology and hepatology |
The Flanks tab provides retrieving flanking sequences of a SNP on all molecules that have placements.
Genomic regions, transcripts, and products
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NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.
NCBI Graphical Sequence Viewer display of the genomic region, transcripts and protein products for the reported RefSNP (rs).
Use the zoom option to view the nucleotides around the RefSNP and find other neighboring RefSNPs.
Visit Sequence Viewer for help with navigating inside the display and modifying the selection of displayed data tracks.