Mouse Transcriptome Project (trans-NIH with Lynx/Solexa MPSS™ technology)
Mouse Transcriptome page
Organization: Signature annotations are shown in Platform GPL1010. Series (GSE1581 and GSE1067) group related Samples (or libraries),and are useful for citing the entire experiment. Each Sample (GSM prefix) provides the filtered signature and TPM counts for each measurement. In addition, raw (unfiltered) data may be downloaded via FTP from each Sample or Series record or from the project FTP directory.
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Signature AnnotationBack to top
| Accession | Title | Build | Last Update |
|---|---|---|---|
| GPL1010 | MPSS [DpnII: Mus musculus] signature list | UniGene build #145 / NCBI build 33 | Dec 14 2005 |
MPSS mouse transcriptome analysis project (87 samples)Back to top
| Accession | Title | Source | Comment | Gender | Release Date |
|---|---|---|---|---|---|
| GSM27138 | Bladder, Male (MoBl.Male) | bladder | total RNA | Male | Oct 26 2004 |
| GSM27139 | Esophagus, Male (MoEs.Male) | esophagus | total RNA | Male | Oct 26 2004 |
| GSM27140 | Heart:Ventricles and Septum, Female (MoHe.FeVS) | heart / ventricles, septum | total RNA | Female | Oct 26 2004 |
| GSM27141 | Kidney:Medulla, Female (MoKi.FeMd) | kidney / medulla | total RNA | Female | Oct 26 2004 |
| GSM27142 | Kidney:Cortex, Male (MoKi.MaCr) | kidney / cortex | total RNA | Male | Oct 26 2004 |
| GSM27143 | Kidney:Medulla, Male (MoKi.MaMd) | kidney / medulla | total RNA | Male | Oct 26 2004 |
| GSM27144 | White fat, Female (MoWF.FeAb) | white fat / abdomen | total RNA | Female | Oct 26 2004 |
| GSM32353 | Brain:Thalamus, Female (MoBr.FeTh) | brain / thalamus | total RNA | Female | Oct 26 2004 |
| GSM32354 | Brain:Cerebellum, Male (MoBr.MaCb) | brain / cerebellum | total RNA | Male | Oct 26 2004 |
| GSM32355 | Brain:Hippocampus, Male (MoBr.MaHi) | brain / hippocampus | total RNA | Male | Oct 26 2004 |
| GSM32356 | Brain:Midbrain, Male (MoBr.MaMb) | brain / midbrain | total RNA | Male | Oct 26 2004 |
| GSM32357 | Liver:left lobe, Male (MoLi.MaLL) | liver / left lobe | total RNA | Male | Oct 26 2004 |
| GSM32358 | Skin:hairy, from back, Female (MoSk.FeHB) | skin / hairy from back | total RNA | Female | Oct 26 2004 |
| GSM32359 | White fat, Male (MoWF.MaAb) | white fat / abdomen | total RNA | Male | Oct 26 2004 |
| GSM34293 | Adrenal, Female (MoAd.Feml) | adrenal | total RNA | Female | Nov 01 2004 |
| GSM34294 | Bladder, Female (MoBl.Feml) | bladder | total RNA | Female | Nov 01 2004 |
| GSM34295 | Bone:Femur, Male (MoBn.MaFm) | bone / femur | total RNA | Male | Nov 01 2004 |
| GSM34296 | Brain:Hypothalamus/preoptic area, Male (MoBr.MHyP) | brain / hypothalamus, preoptic | total RNA | Male | Nov 01 2004 |
| GSM34297 | Brain:Amygdala, Male (MoBr.MaAm) | brain / amygdala | total RNA | Male | Nov 01 2004 |
| GSM34298 | Kidney:Cortex, Female (MoKi.FeCr) | kidney / cortex | total RNA | Female | Nov 01 2004 |
| GSM34299 | Ovary, Female (MoOv.Feml) | ovary | total RNA | Female | Nov 01 2004 |
| GSM35328 | Stomach, Female (MoSt.Feml) | stomach | total RNA | Female | Nov 15 2004 |
| GSM35329 | Uterus:Pregnant E18, Female (MoUt.FP18) | uterus (pregnant) | total RNA | Female | Nov 15 2004 |
| GSM35330 | Uterus, Female (MoUt.Feml) | uterus | total RNA | Female | Nov 15 2004 |
| GSM35331 | Esophagus, Female (MoEs.Feml) | esophagus | total RNA | Female | Nov 15 2004 |
| GSM35332 | Mammary gland, Female (MoMG.Feml) | mammary gland | total RNA | Female | Nov 15 2004 |
| GSM35333 | Spinal cord:entire, Female (MoSC.FeEn) | spinal cord / entire | total RNA | Female | Nov 15 2004 |
| GSM36603 | Bone:Femur, Female (MoBn.FeFm) | bone / femur | total RNA | Female | Nov 30 2004 |
| GSM36604 | Brain:Olfactory Bulb, Female (MoBr.FeOB) | brain / olfactory bulb | total RNA | Female | Nov 30 2004 |
| GSM36605 | Brain:Caudate,Putamen,Accumbens... Male (MoBr.MCPA) | brain (multi parts) | total RNA | Male | Nov 30 2004 |
| GSM36606 | Eye, Male (MoEy.Male) | eye | total RNA | Male | Nov 30 2004 |
| GSM36607 | Skin:hairy, from back, Male (MoSk.MaHB) | skin / hairy from back | total RNA | Male | Nov 30 2004 |
| GSM36608 | Spleen, Female (MoSp.Feml) | spleen | total RNA | Female | Nov 30 2004 |
| GSM36609 | Thyroid/parathyroid, Female (MoTp.Feml) | thyroid + parathyroid | total RNA | Female | Nov 30 2004 |
| GSM36721 | Brain:OlfactoryTubercle,Prefrontal... Female (MoBr.FTCS) | brain (multi parts) | total RNA | Female | Dec 02 2004 |
| GSM36722 | Heart:Ventricles and Septum, Male (MoHe.MaVS) | heart / ventricles, septum | total RNA | Male | Dec 02 2004 |
| GSM36723 | Large intestine, Male (MoLI.Male) | large intestine | total RNA | Male | Dec 02 2004 |
| GSM36724 | Liver:right lobe, Male (MoLi.MaRL) | liver / right lobe | total RNA | Male | Dec 02 2004 |
| GSM36725 | Thymus, Male (MoTh.Male) | thymus | total RNA | Male | Dec 02 2004 |
| GSM38489 | Heart:Aorta, Male (MoAo.Male) | heart / aorta | total RNA | Male | Jan 05 2005 |
| GSM38490 | Brain:Hypothalamus/preoptic area, Female (MoBr.FHyP) | brain / hypothalamus, preoptic | total RNA | Female | Jan 05 2005 |
| GSM38491 | Brain:Thalamus, Male (MoBr.MaTh) | brain / thalamus | total RNA | Male | Jan 05 2005 |
| GSM38492 | Cartilage:Xiphoid, Male (MoCg.MaXi) | cartilage | total RNA | Male | Jan 05 2005 |
| GSM38493 | Eye, Female (MoEy.Feml) | eye | total RNA | Female | Jan 05 2005 |
| GSM38494 | Lymph nodes: mesenteric, Male (MoLN.MaMs) | lymph nodes | total RNA | Male | Jan 05 2005 |
| GSM38495 | Pituitary, Female (MoPi.Feml) | pituitary | total RNA | Female | Jan 05 2005 |
| GSM38496 | Pituitary, Male (MoPi.Male) | pituitary | total RNA | Male | Jan 05 2005 |
| GSM38497 | Spinal cord:entire, Male (MoSC.MaEn) | spinal cord / entire | total RNA | Male | Jan 05 2005 |
| GSM38498 | Thymus, Female (MoTh.Feml) | thymus | total RNA | Female | Jan 05 2005 |
| GSM38499 | Thyroid/parathyroid, Male (MoTp.Male) | thyroid + parathyroid | total RNA | Male | Jan 05 2005 |
| GSM40111 | Brain:OlfactoryTubercle,PrefrontalCortex... Male (MoBr.MTCS) | brain (multi parts) | total RNA | Male | Jan 28 2005 |
| GSM40112 | Cervix and vagina, Female (MoCV.Feml) | cervix / vagina | total RNA | Female | Jan 28 2005 |
| GSM40113 | Cartilage:Xiphoid, Female (MoCg.FeXi) | cartilage | total RNA | Female | Jan 28 2005 |
| GSM40114 | Embryo E18, Male/Female (MoEm.MF18) | embryo / E18 | total RNA | Male/Female | Jan 28 2005 |
| GSM40115 | Heart: atria, Female (MoHe.FeAt) | heart / atria | total RNA | Female | Jan 28 2005 |
| GSM40116 | Heart: atria, Male (MoHe.MaAt) | heart / atria | total RNA | Male | Jan 28 2005 |
| GSM40117 | Large intestine, Female (MoLI.Feml) | large intestine | total RNA | Female | Jan 28 2005 |
| GSM40118 | Lung, Female (MoLu.Feml) | lung | total RNA | Female | Jan 28 2005 |
| GSM40119 | Lung, Male (MoLu.Male) | lung | total RNA | Male | Jan 28 2005 |
| GSM40120 | Small intestine, Female (MoSI.Feml) | small intestine | total RNA | Female | Jan 28 2005 |
| GSM40121 | Testis, Male (MoTe.Male) | testis | total RNA | Male | Jan 28 2005 |
| GSM44327 | Adrenal, Male (MoAd.Male) | adrenal | total RNA | Male | Mar 02 2005 |
| GSM44328 | Heart:Aorta, Female (MoAo.Feml) | heart / aorta | total RNA | Female | Mar 02 2005 |
| GSM44329 | Brown Fat, Female (MoBF.Feml) | brown fat | total RNA | Female | Mar 02 2005 |
| GSM44330 | Brown Fat, Male (MoBF.Male) | brown fat | total RNA | Male | Mar 02 2005 |
| GSM44331 | Brain:Caudate,Putamen,Accumbens... Female (MoBr.FCPA) | brain (multi parts) | total RNA | Female | Mar 02 2005 |
| GSM44332 | Lymph nodes: mesenteric, Female (MoLN.FeMs) | lymph nodes | total RNA | Female | Mar 02 2005 |
| GSM44333 | Placenta - E18, Female (MoPl.FE18) | placenta / E18 | total RNA | Female | Mar 02 2005 |
| GSM44334 | Brain:Cortical mantle, Female (MoBr.FeCM) | brain / cortical mantle | total RNA | Female | Mar 02 2005 |
| GSM44335 | Brain:Midbrain, Female (MoBr.FeMb) | brain / midbrain | total RNA | Female | Mar 02 2005 |
| GSM44336 | Brain:Cortical mantle, Male (MoBr.MaCM) | brain / cortical mantle | total RNA | Male | Mar 02 2005 |
| GSM44337 | Brain:Olfactory Bulb, Male (MoBr.MaOB) | brain / olfactory bulb | total RNA | Male | Mar 02 2005 |
| GSM47338 | Brain:Amygdala, Female (MoBr.FeAm) | brain / amygdala | total RNA | Female | Apr 04 2005 |
| GSM47339 | Brain:Cerebellum, Female (MoBr.FeCb) | brain / cerebellum | total RNA | Female | Apr 04 2005 |
| GSM47340 | Brain:Hippocampus, Female (MoBr.FeHi) | brain / hippocampus | total RNA | Female | Apr 04 2005 |
| GSM47341 | Liver:right lobe, Female (MoLi.FeRL) | liver / right lobe | total RNA | Female | Apr 04 2005 |
| GSM47342 | Prostate, Male (MoPr.Male) | prostate | total RNA | Male | Apr 04 2005 |
| GSM47343 | Small intestine, Male (MoSI.Male) | small intestine | total RNA | Male | Apr 04 2005 |
| GSM47344 | SkeletalMuscle:Thigh, Female (MoSM.FeTh) | skeletal muscle / thigh | total RNA | Female | Apr 04 2005 |
| GSM47345 | SkeletalMuscle:Thigh, Male (MoSM.MaTh) | skeletal muscle / thigh | total RNA | Male | Apr 04 2005 |
| GSM47346 | Spleen, Male (MoSp.Male) | spleen | total RNA | Male | Apr 04 2005 |
| GSM80478 | Brain:Medulla, Female (MoMe.Feml) | brain / medulla | total RNA | Female | Oct 28 2005 |
| GSM80479 | Brain:Medulla, Male (MoMe.Male) | brain / medulla | total RNA | Male | Oct 28 2005 |
| GSM80480 | Brain:Pons, Female (MoPo.Feml) | brain / pons | total RNA | Female | Oct 28 2005 |
| GSM80481 | Brain:Pons, Male (MoPo.Male) | brain / pons | total RNA | Male | Oct 28 2005 |
| GSM87830 | ES cells, strain C57BL6 (MoES.C57B) | ES cells / C57BL6 | total RNA | NA | Dec 14 2005 |
| GSM87831 | ES cells, strain 129 (MoES.R1xx) | ES cells / 129 | total RNA | NA | Dec 14 2005 |
GSE1067: MPSS analysis of mouse BLK.CL4 and liver cellsBack to top
| Accession | Title | Source | comment | Gender | Release Date |
|---|---|---|---|---|---|
| GSM17228 | BLK CL.4 cells | BLK CL4 | total RNA | Oct 26 2004 | |
| GSM17241 | BLK CL.4 cells - nuclear RNA | BLK CL4 | nuclear RNA | Oct 26 2004 | |
| GSM17242 | BLK CL.4 cells - post-nuclear RNA | BLK CL4 | cytoplasmic RNA | Oct 26 2004 | |
| GSM17243 | Liver | liver | total RNA | Oct 26 2004 | |
| GSM17244 | Liver - nuclear RNA | liver | nuclear RNA | Oct 26 2004 | |
| GSM17245 | Liver - post-nuclear RNA | liver | post-nuclear RNA | Oct 26 2004 |