Role of N-t-Boc group in helix initiation in a novel tetrapeptide

J Pept Res. 2002 Jun;59(6):249-56. doi: 10.1034/j.1399-3011.2002.02989.x.

Abstract

Protecting groups in N- and C-terminal positions play a decisive role in the conformational preference of smaller peptides. Conformational analysis of tetrapeptide derivatives containing Ala, Ile and Gly residues was performed. Peptide 1, Boc-Ala-Ile-Ile-Gly-OMe (Boc: tert-butyloxycarbonyl) has a predominantly helical turn conformation in all the alcoholic solvents studied, whereas in the solid state it has a beta-sheet conformation. In contrast, peptide 2, Ac-Ala-Ile-Ile-Gly-OMe (Ac: acetyl) has a random coil conformation in solution. The FTIR spectrum of peptide 1 shows a lower frequency of urethane carbonyl, indicating involvement of the carbonyl group in hydrogen bonding in the helical turn.

Publication types

  • Research Support, Non-U.S. Gov't

MeSH terms

  • Amino Acid Sequence
  • Amyloid
  • Circular Dichroism
  • Formic Acid Esters / chemistry*
  • Hydrogen Bonding
  • Molecular Structure
  • Oligopeptides / chemical synthesis*
  • Oligopeptides / chemistry*
  • Protein Structure, Secondary
  • Spectroscopy, Fourier Transform Infrared

Substances

  • Amyloid
  • Formic Acid Esters
  • Oligopeptides
  • t-butyloxycarbonyl group