Modelling cellular processes with Python and Scipy

B G Olivier; J M Rohwer; J H S Hofmeyr

doi:10.1023/a:1020346417223

Modelling cellular processes with Python and Scipy

Mol Biol Rep. 2002;29(1-2):249-54. doi: 10.1023/a:1020346417223.

Authors

B G Olivier¹, J M Rohwer, J H S Hofmeyr

Affiliation

¹ Dept of Biochemistry, University of Stellenbosch, Matieland, South Africa. bgoli@sun.ac.za

PMID: 12241066
DOI: 10.1023/a:1020346417223

Abstract

This paper shows how Python and Scipy can be used to simulate the time-dependent and steady-state behaviour of reaction networks, and introduces Pysces, a Python modelling toolkit.

MeSH terms

Computer Simulation*
Energy Metabolism*
Models, Biological*
Software*