The phage N4 virion RNA polymerase catalytic domain is related to single-subunit RNA polymerases

EMBO J. 2002 Nov 1;21(21):5815-23. doi: 10.1093/emboj/cdf584.

Abstract

In vitro, bacteriophage N4 virion RNA polymerase (vRNAP) recognizes in vivo sites of transcription initiation on single-stranded templates. N4 vRNAP promoters are comprised of a hairpin structure and conserved sequences. Here, we show that vRNAP consists of a single 3500 amino acid polypeptide, and we define and characterize a transcriptionally active 1106 amino acid domain (mini-vRNAP). Biochemical and genetic characterization of this domain indicates that, despite its peculiar promoter specificity and lack of extensive sequence similarity to other DNA-dependent RNA polymerases, mini-vRNAP is related to the family of T7-like RNA polymerases.

Publication types

  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Amino Acid Motifs
  • Amino Acid Sequence
  • Bacteriophage N4 / enzymology*
  • Base Sequence
  • Catalytic Domain
  • Cloning, Molecular
  • DNA Primers
  • DNA-Directed RNA Polymerases / chemistry
  • DNA-Directed RNA Polymerases / genetics
  • DNA-Directed RNA Polymerases / metabolism*
  • Molecular Sequence Data
  • Mutagenesis, Site-Directed
  • Phylogeny
  • Recombinant Proteins / chemistry
  • Recombinant Proteins / genetics
  • Recombinant Proteins / metabolism
  • Sequence Homology, Amino Acid
  • Virion / enzymology*

Substances

  • DNA Primers
  • Recombinant Proteins
  • DNA-Directed RNA Polymerases