Crystal structure of the specificity domain of ribonuclease P

Nature. 2003 Feb 13;421(6924):760-4. doi: 10.1038/nature01386.

Abstract

RNase P is the only endonuclease responsible for processing the 5' end of transfer RNA by cleaving a precursor and leading to tRNA maturation. It contains an RNA component and a protein component and has been identified in all organisms. It was one of the first catalytic RNAs identified and the first that acts as a multiple-turnover enzyme in vivo. RNase P and the ribosome are so far the only two ribozymes known to be conserved in all kingdoms of life. The RNA component of bacterial RNase P can catalyse pre-tRNA cleavage in the absence of the RNase P protein in vitro and consists of two domains: a specificity domain and a catalytic domain. Here we report a 3.15-A resolution crystal structure of the 154-nucleotide specificity domain of Bacillus subtilis RNase P. The structure reveals the architecture of this domain, the interactions that maintain the overall fold of the molecule, a large non-helical but well-structured module that is conserved in all RNase P RNA, and the regions that are involved in interactions with the substrate.

Publication types

  • Research Support, Non-U.S. Gov't
  • Research Support, U.S. Gov't, Non-P.H.S.
  • Research Support, U.S. Gov't, P.H.S.

MeSH terms

  • Bacillus subtilis / enzymology*
  • Bacillus subtilis / genetics*
  • Base Sequence
  • Binding Sites
  • Crystallography, X-Ray
  • Endoribonucleases / chemistry*
  • Endoribonucleases / genetics*
  • Models, Molecular
  • Molecular Sequence Data
  • Nucleic Acid Conformation*
  • RNA, Bacterial / chemistry
  • RNA, Bacterial / genetics
  • RNA, Catalytic / chemistry*
  • RNA, Catalytic / genetics*
  • Ribonuclease P
  • Substrate Specificity

Substances

  • RNA, Bacterial
  • RNA, Catalytic
  • Endoribonucleases
  • Ribonuclease P

Associated data

  • PDB/1NBS